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GEO help: Mouse over screen elements for information. |
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Status |
Public on Sep 28, 2012 |
Title |
HudsonAlpha_ChipSeq_MCF-7_GABP_v042211.1 |
Sample type |
SRA |
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Source name |
MCF-7
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Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP antibody targetdescription: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence. antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-28312 controlid: SL16758,SL13504 labexpid: SL14683,SL13459 softwareversion: MACS cell sex: F antibody: GABP antibody antibodydescription: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP antibody targetdescription: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence. antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-28312 treatment: None treatment description: No special treatment or protocol applies protocol: v042211.1 protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers) controlid: SL16758,SL13504 labexpid: SL14683,SL13459 replicate: 1,2 softwareversion: MACS
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Biomaterial provider |
ATCC
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Treatment protocol |
None
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Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
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Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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Submission date |
Sep 28, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
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Organization name |
ENCODE DCC
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Street address |
300 Pasteur Dr
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
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Platform ID |
GPL9052 |
Series (2) |
GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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Relations |
SRA |
SRX190320 |
BioSample |
SAMN01731749 |
Named Annotation |
GSM1010864_hg19_wgEncodeHaibTfbsMcf7GabpV0422111RawRep1.bigWig |
Named Annotation |
GSM1010864_hg19_wgEncodeHaibTfbsMcf7GabpV0422111RawRep2.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM1010864_hg19_wgEncodeHaibTfbsMcf7GabpV0422111PkRep1.broadPeak.gz |
155.2 Kb |
(ftp)(http) |
BROADPEAK |
GSM1010864_hg19_wgEncodeHaibTfbsMcf7GabpV0422111PkRep2.broadPeak.gz |
100.0 Kb |
(ftp)(http) |
BROADPEAK |
GSM1010864_hg19_wgEncodeHaibTfbsMcf7GabpV0422111RawRep1.bigWig |
196.2 Mb |
(ftp)(http) |
BIGWIG |
GSM1010864_hg19_wgEncodeHaibTfbsMcf7GabpV0422111RawRep2.bigWig |
95.4 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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