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Series GSE93812 Query DataSets for GSE93812
Status Public on Jan 19, 2017
Title LuCaP prostate cancer patient-derived xenografts reflect the molecular heterogeneity of advanced disease and serve as models for evaluating cancer therapeutics [CGH]
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary In order to advance our understanding of prostate cancer biology and identify new effective treatments we have established and characterized multiple advanced prostate cancer patient-derived xenografts that mimic well the disease in patients.
 
Overall design Custom Agilent 44K whole human genome expression oligonucleotide microarrays were used to profile 24 early and late passage LuCaP PCa xenograft lines. RNA was amplified prior to hybridization against a common reference pool of prostate tumor cell lines. Custom Agilent 415K whole human CGH microarrays were used to profile 33 LuCaP PCa xenograft lines. Genomic DNA from tumors was hybridized against a pool of reference normal male DNA.
 
Contributor(s) Corey E, Nguyen HM, Morrissey C, Brown LG, Coleman IM, Higano CS, Mostaghel EA, Zhang X, True LD, Lange PH, Nelson PS, Vessella RL
Citation(s) 28156002
Submission date Jan 18, 2017
Last update date May 26, 2017
Contact name Ilsa Coleman
E-mail(s) icoleman@fredhutch.org
Phone 206-667-1703
Organization name Fred Hutchinson Cancer Center
Department Human Biology
Lab Peter Nelson
Street address 1100 Fairview Ave N, E2-112
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL21289 Agilent-023364 Custom Whole Human Genome CGH Microarray 2x415K [Probe Name version]
Samples (33)
GSM2462862 LuCaP 23.1 PCa xenograft tumor
GSM2462863 LuCaP 23.12 PCa xenograft tumor
GSM2462864 LuCaP 23.1CR PCa xenograft tumor
This SubSeries is part of SuperSeries:
GSE93808 LuCaP prostate cancer patient-derived xenografts reflect the molecular heterogeneity of advanced disease and serve as models for evaluating cancer therapeutics
Relations
BioProject PRJNA362470

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE93812_RAW.tar 3.8 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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