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Series GSE88168 Query DataSets for GSE88168
Status Public on Nov 08, 2016
Title RAMPAGE from HT-29 (ENCSR295GUQ)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from independent growths of cell line HT-29. They are stranded PE101 Illumina Hi-Seq RAMPAGE libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR295GUQ/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2343525 RAMPAGE from HT-29 (ENCLB015MFN)
GSM2343526 RAMPAGE from HT-29 (ENCLB056YBJ)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE88168_ENCFF122ZBL_transcription_start_sites_GRCh38.bed.gz 73.5 Kb (ftp)(http) BED
GSE88168_ENCFF213TQW_transcription_start_sites_GRCh38.bigBed 361.1 Kb (ftp)(http) BIGBED
GSE88168_ENCFF284TRG_transcription_start_sites_hg19.bed.gz 73.2 Kb (ftp)(http) BED
GSE88168_ENCFF558KYJ_transcription_start_sites_hg19.bigBed 360.5 Kb (ftp)(http) BIGBED
GSE88168_RAW.tar 48.2 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, GFF, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record
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