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Series GSE83347 Query DataSets for GSE83347
Status Public on Feb 14, 2018
Title Differential gene expression of human melanoma cells [ChIP-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report the gene expression comparison of human A375 melanoma cells with GDF6 and BMP pathway modulation. These comparisons were used to determine the gene signature regulated by GDF6.
Overall design Examination of gene expression in one cell type +/- GDF6 knockdown as well as +/- downstream pathway reactivation.
Contributor(s) Venkatesan AM, Ceol CJ, Gujja S, Edwards YJ
Citation(s) 29202482
Submission date Jun 14, 2016
Last update date May 15, 2019
Contact name Dr Yvonne Edwards, PhD
Organization name University of Massachusetts Medical School
Department Program in Molecular Medicine
Lab Bioinformatics Core
Street address 373 Plantation Street
City Worcester
State/province MA
ZIP/Postal code 01605
Country USA
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (6)
GSM2199947 shGFP1
GSM2199948 shGFP2
GSM2199949 shGDF61
This SubSeries is part of SuperSeries:
GSE83400 GDF6-induced BMP signaling reawakens a neural crest identity in melanoma to prevent cell death and differentiation
BioProject PRJNA325676
SRA SRP076568

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83347_RAW.tar 70.0 Kb (http)(custom) TAR (of XLS)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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