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Series GSE81118 Query DataSets for GSE81118
Status Public on Oct 06, 2016
Title Differential gene expression underlying ovarian phenotype determination in honey bee, Apis mellifera, caste development
Organism Apis mellifera
Experiment type Expression profiling by array
Summary Adult honey bee queens and workers drastically differ in ovary size. This adult ovary phenotype difference becomes established during the last two larval instars, when massive programmed cell death in the ovaries of worker larvae leads to the degeneration and removal of 95-99% of the ovariole anlagen. The higher juvenile hormone (JH) levels in queen larvae protect their ovaries against such degeneration. To gain insights into the molecular architecture underlying this divergence critical for adult caste fate we performed a microarray analysis contrasting RNA extracts from fourth and early fifth instar queen and worker ovaries. While for the fourth instar we found differential expression (log2FC > 1.0) for only nine genes, the number of differentially represented transcripts (DRTs) increased to 56 in early fifth instar ovaries. From these, 18 had their expression levels further analyzed by real-time PCR (RT-qPCR). For 13 of these the expression differed significantly between queen and worker ovaries at least one time point in development, and interestingly, genes with enzyme functions were overexpressed in workers, while genes related to transcription and signaling were so in queens. For the RT-qPCR confirmed genes we further analyzed their response to JH, revealing a significant up-regulation for two genes, one encoding a short chain dehydrogenase (SDR) and the other heat shock protein 90 (Hsp90). Five other genes, including Hsp60 and hexamerin 70b, were significantly down-regulated by JH. As SDR genes have previously come up as differentially expressed in different transcriptome assays in honey bee larvae, and heat shock proteins are involved in hormone responses, these are interesting candidates for further functional assays.
 
Overall design RNA samples (from pools of ovaries) from L4 and L5F queens and workers were hybridized in pairs (queen/worker) and in dye-swaps (Cy3/Cy5).
 
Contributor(s) Lago DC, Humann FC, Barchuk AR, Kuruvilla JA, Hartfelder KH
Citation(s) 27720811
Submission date May 04, 2016
Last update date Jan 24, 2017
Contact name Angel Roberto Barchuk
E-mail(s) arbarchuk@yahoo.com
Phone +55 35 991298706
Organization name Federal University of Alfenas
Department Cell and Developmental Biology
Lab LABAInt
Street address Rua Gabriel Monteiro Silva 700, Campus Unifal
City Alfenas
State/province Minas Gerais
ZIP/Postal code 37130-000
Country Brazil
 
Platforms (1)
GPL14758 UIUC Honey bee oligo 13K v1
Samples (4)
GSM2143167 L4 Workers/Queens ovaries
GSM2143168 L4 Workers/Queens ovaries (dye-swap)
GSM2143169 L5 Workers/Queens ovaries
Relations
BioProject PRJNA320633

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE81118_BeeOligo120406.txt.gz 137.0 Kb (ftp)(http) TXT
GSE81118_RAW.tar 7.4 Mb (http)(custom) TAR (of DAT)
GSE81118_normalized_data.txt.gz 197.7 Kb (ftp)(http) TXT
Processed data are available on Series record

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