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Series GSE80861 Query DataSets for GSE80861
Status Public on May 26, 2016
Title shRNA RNA-seq from HepG2 (ENCSR148MQK)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary shRNA knockdown against SF3B4 in HepG2 cells followed by RNA-seq. (SF3B4-BGHLV12)

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR148MQK/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Apr 29, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2138720 shRNA RNA-seq from HepG2 (ENCLB076ADA)
GSM2138721 shRNA RNA-seq from HepG2 (ENCLB792HAC)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80861_RAW.tar 3.9 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
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