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| Status |
Public on Apr 20, 2007 |
| Title |
Expression data from soybean seed compartments with embryos at the heart stage |
| Organism |
Glycine max |
| Experiment type |
Expression profiling by array
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| Summary |
We microdissected each compartment from 8-micron paraffin sections using the Leica AS LMD system to identify all genes active in different compartments of a soybean seed containing a heart-stage embryo.
Keywords: cell type comparison
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| Overall design |
heart-stage seed compartments were isolated using the Leica AS LMD system. Total RNA was amplified and hybridized with Affymetrix Soybean Genome Arrays.
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| Web link |
http://estdb.biology.ucla.edu/seed
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| Contributor(s) |
Wagmaister JA, Bui AQ, Li S, Goldberg RB, Cheng C, Wang X, Le BH, Harada JJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Apr 12, 2007 |
| Last update date |
Nov 22, 2016 |
| Contact name |
Bob Goldberg |
| E-mail(s) |
bobglab@mcdb.ucla.edu
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| Phone |
310-825-3270
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| Organization name |
University of California, Los Angeles
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| Department |
Molecular, Cell and Developmental Biology
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| Street address |
610 Charles E Young Drive East
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| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
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| Platforms (1) |
| GPL4592 |
[Soybean] Affymetrix Soybean Genome Array |
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| Samples (23)
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| GSM182029 |
Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1 |
| GSM182030 |
Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2 |
| GSM182031 |
Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3 |
| GSM182032 |
Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1 |
| GSM182033 |
Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2 |
| GSM182034 |
Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3 |
| GSM182035 |
Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1 |
| GSM182036 |
Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2 |
| GSM182037 |
Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1 |
| GSM182038 |
Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2 |
| GSM182039 |
Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1 |
| GSM182040 |
Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2 |
| GSM182041 |
Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1 |
| GSM182042 |
Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2 |
| GSM182043 |
Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1 |
| GSM182044 |
Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2 |
| GSM182045 |
Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 1 |
| GSM182046 |
Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 2 |
| GSM182047 |
Whole Seed at the heart stage, biological replicate 1 |
| GSM182048 |
Whole Seed at the heart stage, biological replicate 2 |
| GSM184826 |
Young trifoliate leaf, biological replicate 1 |
| GSM184827 |
Young trifoliate leaf, biological replicate 2 |
| GSM201130 |
Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3 |
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| Relations |
| BioProject |
PRJNA100459 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE7511_RAW.tar |
99.9 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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