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Series GSE70041 Query DataSets for GSE70041
Status Public on Mar 08, 2016
Title Transcriptome analysis of a Staphylococcus aureus mutant defective in the transcription termination factor Rho.
Platform organism Staphylococcus aureus subsp. aureus NCTC 8325
Sample organism Staphylococcus aureus
Experiment type Expression profiling by genome tiling array
Summary This analysis is part of the study Whole-transcriptome analysis of Staphylococcus aureus under laboratory and infection-mimicking conditions (Mäder, Nicolas et al., to be submitted) where the S. aureus HG001 transcriptome was analyzed under more than 40 different
biological conditions. The data revealed a relatively low abundance of antisense RNAs in S. aureus, overlapping only 6% of the coding genes. Transcriptome analysis of the rho deletion mutant revealed a remarkable overall increase in antisense transcription in S. aureus.
Overall design delta rho and wild type
Contributor(s) Mäder U, Nicolas P, Debarbouille M, Guérin C, Hiron A, van der Kooi-Pol M, Schaffer M
Citation(s) 27035918
Submission date Jun 19, 2015
Last update date Jun 07, 2016
Contact name Pierre Nicolas
Phone +33-1-3465-2894
Organization name INRAE - Université Paris-Saclay
Street address INRAE - Domaine de Vilvert
City Jouy-en-Josas
ZIP/Postal code F-78350
Country France
Platforms (1)
GPL20587 BaSysBio Staphylococcus aureus T1 385K array 110831_SA_JH_Tiling
Samples (16)
GSM1716121 wild type_TSB-exp_rep1
GSM1716122 wild type_TSB-exp_rep2
GSM1716123 delta rho_TSB-exp_rep1
This SubSeries is part of SuperSeries:
GSE70043 Staphylococcus aureus HG001
BioProject PRJNA287530

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70041_RAW.tar 244.0 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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