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Series GSE61268 Query DataSets for GSE61268
Status Public on Oct 01, 2015
Title HOTAIR or shHOTAIR lentiviral infected prostate cancer cells [ChIP-Seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary LNCaP prostate cancer cells were infected by lentivirus expressing either ctrl or HOTAIR, and the cells were cultured in hormone-deprived condition (Ethl) or in the presence of androgen (R1881). C4-2B prostate cancer cells were infected by lentivirus expressing either shCtrl or shHOTAIR, and the cells were cultured in hormone-deprived condition (Ethl) or in the presence of androgen (R1881).
 
Overall design ChIP-Seq examination of AR binding sites in LNCaP and C4-2B cells following HOTAIR de-regulation.
 
Contributor(s) Zhang A, Zhao J, Yu J
Citation(s) 26411689
Submission date Sep 09, 2014
Last update date May 15, 2019
Contact name Jindan Yu
E-mail(s) jindan-yu@northwestern.edu
Organization name Northwestern University
Department Division of Hematology/Oncology
Lab Jindan Yu's lab
Street address 303 E. Superior St., Lurie 5-117
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platforms (1)
GPL15456 Illumina HiScanSQ (Homo sapiens)
Samples (9)
GSM1501184 LNCaP AR ChIP-seq CTRL Ethl
GSM1501185 LNCaP AR ChIP-seq CTRL R1881
GSM1501186 LNCaP AR ChIP-seq HOTAIR Ethl
This SubSeries is part of SuperSeries:
GSE61270 HOTAIR or shHOTAIR lentiviral infected prostate cancer cells
Relations
BioProject PRJNA260625
SRA SRP046751

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61268_RAW.tar 463.6 Mb (http)(custom) TAR (of BEDGRAPH)
GSE61268_m118_vs_m114_m114_m136ctrl_peak.txt.gz 2.0 Kb (ftp)(http) TXT
GSE61268_m118_vs_m114_m118_m136ctrl_peak.txt.gz 103.9 Kb (ftp)(http) TXT
GSE61268_m118_vs_m114_m118_m136ctrl_peak_m114_m136ctrl_peak.txt.gz 724 b (ftp)(http) TXT
GSE61268_m118_vs_m116_m116_m136ctrl_peak.txt.gz 43.5 Kb (ftp)(http) TXT
GSE61268_m118_vs_m116_m118_m136ctrl_peak.txt.gz 29.2 Kb (ftp)(http) TXT
GSE61268_m118_vs_m116_m118_m136ctrl_peak_m116_m136ctrl_peak.txt.gz 94.7 Kb (ftp)(http) TXT
GSE61268_m120_vs_m116_m116_m136ctrl_peak.txt.gz 10.3 Kb (ftp)(http) TXT
GSE61268_m120_vs_m116_m120_m136ctrl_peak.txt.gz 220.2 Kb (ftp)(http) TXT
GSE61268_m120_vs_m116_m120_m136ctrl_peak_m116_m136ctrl_peak.txt.gz 138.9 Kb (ftp)(http) TXT
GSE61268_m132_vs_m135_m132_peak.txt.gz 29.8 Kb (ftp)(http) TXT
GSE61268_m132_vs_m135_m132_peak_m135_peak.txt.gz 38.0 Kb (ftp)(http) TXT
GSE61268_m132_vs_m135_m135_peak.txt.gz 33.2 Kb (ftp)(http) TXT
GSE61268_m134_vs_m132_m132_peak.txt.gz 44.9 Kb (ftp)(http) TXT
GSE61268_m134_vs_m132_m134_peak.txt.gz 7.5 Kb (ftp)(http) TXT
GSE61268_m134_vs_m132_m134_peak_m132_peak.txt.gz 18.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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