|
| Status |
Public on Oct 01, 2015 |
| Title |
HOTAIR or shHOTAIR lentiviral infected prostate cancer cells [ChIP-Seq] |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
LNCaP prostate cancer cells were infected by lentivirus expressing either ctrl or HOTAIR, and the cells were cultured in hormone-deprived condition (Ethl) or in the presence of androgen (R1881). C4-2B prostate cancer cells were infected by lentivirus expressing either shCtrl or shHOTAIR, and the cells were cultured in hormone-deprived condition (Ethl) or in the presence of androgen (R1881).
|
| |
|
| Overall design |
ChIP-Seq examination of AR binding sites in LNCaP and C4-2B cells following HOTAIR de-regulation.
|
| |
|
| Contributor(s) |
Zhang A, Zhao J, Yu J |
| Citation(s) |
26411689 |
| |
| Submission date |
Sep 09, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Jindan Yu |
| E-mail(s) |
jindan.yu@emory.edu
|
| Organization name |
Emory University
|
| Department |
Urology
|
| Lab |
Jindan Yu's lab
|
| Street address |
E330, 1760 Haygood Dr NE
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30322 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL15456 |
Illumina HiScanSQ (Homo sapiens) |
|
| Samples (9)
|
|
| This SubSeries is part of SuperSeries: |
| GSE61270 |
HOTAIR or shHOTAIR lentiviral infected prostate cancer cells |
|
| Relations |
| BioProject |
PRJNA260625 |
| SRA |
SRP046751 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE61268_RAW.tar |
463.6 Mb |
(http)(custom) |
TAR (of BEDGRAPH) |
| GSE61268_m118_vs_m114_m114_m136ctrl_peak.txt.gz |
2.0 Kb |
(ftp)(http) |
TXT |
| GSE61268_m118_vs_m114_m118_m136ctrl_peak.txt.gz |
103.9 Kb |
(ftp)(http) |
TXT |
| GSE61268_m118_vs_m114_m118_m136ctrl_peak_m114_m136ctrl_peak.txt.gz |
724 b |
(ftp)(http) |
TXT |
| GSE61268_m118_vs_m116_m116_m136ctrl_peak.txt.gz |
43.5 Kb |
(ftp)(http) |
TXT |
| GSE61268_m118_vs_m116_m118_m136ctrl_peak.txt.gz |
29.2 Kb |
(ftp)(http) |
TXT |
| GSE61268_m118_vs_m116_m118_m136ctrl_peak_m116_m136ctrl_peak.txt.gz |
94.7 Kb |
(ftp)(http) |
TXT |
| GSE61268_m120_vs_m116_m116_m136ctrl_peak.txt.gz |
10.3 Kb |
(ftp)(http) |
TXT |
| GSE61268_m120_vs_m116_m120_m136ctrl_peak.txt.gz |
220.2 Kb |
(ftp)(http) |
TXT |
| GSE61268_m120_vs_m116_m120_m136ctrl_peak_m116_m136ctrl_peak.txt.gz |
138.9 Kb |
(ftp)(http) |
TXT |
| GSE61268_m132_vs_m135_m132_peak.txt.gz |
29.8 Kb |
(ftp)(http) |
TXT |
| GSE61268_m132_vs_m135_m132_peak_m135_peak.txt.gz |
38.0 Kb |
(ftp)(http) |
TXT |
| GSE61268_m132_vs_m135_m135_peak.txt.gz |
33.2 Kb |
(ftp)(http) |
TXT |
| GSE61268_m134_vs_m132_m132_peak.txt.gz |
44.9 Kb |
(ftp)(http) |
TXT |
| GSE61268_m134_vs_m132_m134_peak.txt.gz |
7.5 Kb |
(ftp)(http) |
TXT |
| GSE61268_m134_vs_m132_m134_peak_m132_peak.txt.gz |
18.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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