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| Status |
Public on Dec 31, 2014 |
| Title |
Gene expression data for 39 inbred mice strains for CD4+ T cells |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Genome-wide expression data were generated for CD3+CD4+CD62L+ naïve T splenocytes across 39 strains in the MPD “Priority Strain Panel”.
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| Overall design |
Inbred mouse strains from the MDP Priority Strain Panel, representing 39 strains, were obtained from the Jackson Laboratory production facility in Bar Harbor, Maine, at five weeks of age. All mice were bred in the Jackson Laboratory production facility under SPF conditions. CD3+CD4+CD62L+ naïve T splenocytes were sorted from pools of two to three mice. Two biological replicates were generated for each strain using the ImmGen standard operating protocol (SOP; www.immgen.org). Gene expression data was generated for bone marrow granulocytes (GN) using Affymetrix ST1.0 microarrays resulting in the quantification of expression levels for 25,134 probes corresponding to 21,951 unique genes.
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| Contributor(s) |
Mostafavi S, Ortiz-Lopez A, Mathis D, Benoist C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 12, 2014 |
| Last update date |
Mar 04, 2019 |
| Contact name |
Liang Yang |
| Organization name |
Harvard Medical School
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| Department |
Pathology
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| Lab |
CBDM
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| Street address |
77 Avenue Louis Pasteur
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (1) |
| GPL6246 |
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] |
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| Samples (82)
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| This SubSeries is part of SuperSeries: |
| GSE60338 |
Gene expression data for 39 inbred mice strains for neutrophils and CD4+ T cells |
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| Relations |
| BioProject |
PRJNA258056 |
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