|
| Status |
Public on May 22, 2014 |
| Title |
Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage |
| Organism |
Glycine max |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We performed small-RNA profiling of soybean seed regions and sub-regions, to gain new insights into the regulatory processes required for seed differentiation.
|
| |
|
| Overall design |
Eight subregions of the Heart stage of the soybean seeds were analyzed. Two biological replicates were collected for each subregions.
|
| |
|
| Contributor(s) |
Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 21, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
John Harada |
| E-mail(s) |
jjharada@ucdavis.edu
|
| Organization name |
University of California
|
| Department |
Plant Biology
|
| Lab |
Harada lab
|
| Street address |
One Shields Avenue
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL15008 |
Illumina HiSeq 2000 (Glycine max) |
|
| Samples (16)
|
| GSM1396276 |
Soybean Heart Stage Endothelium-biological replicate 1 |
| GSM1396277 |
Soybean Heart Stage Endothelium-biological replicate 2 |
| GSM1396278 |
Soybean Heart Stage Embryo Proper-biological replicate 1 |
| GSM1396279 |
Soybean Heart Stage Embryo Proper-biological replicate 2 |
| GSM1396280 |
Soybean Heart Stage Endosperm-biological replicate 1 |
| GSM1396281 |
Soybean Heart Stage Endosperm-biological replicate 2 |
| GSM1396282 |
Soybean Heart Stage Seed Coat Epidermis-biological replicate 1 |
| GSM1396283 |
Soybean Heart Stage Seed Coat Epidermis-biological replicate 2 |
| GSM1396284 |
Soybean Heart Stage Seed Coat Inner Integument-biological replicate 1 |
| GSM1396285 |
Soybean Heart Stage Seed Coat Inner Integument-biological replicate 2 |
| GSM1396286 |
Soybean Heart Stage Seed Coat Outer Integument-biological replicate 1 |
| GSM1396287 |
Soybean Heart Stage Seed Coat Outer Integument-biological replicate 2 |
| GSM1396288 |
Soybean Heart Stage Suspensor-biological replicate 1 |
| GSM1396289 |
Soybean Heart Stage Suspensor-biological replicate 2 |
| GSM1695750 |
Soybean Heart Stage Hilum-Biological replicate 1 |
| GSM1695751 |
Soybean Heart Stage Hilum-Biological replicate 2 |
|
| Relations |
| BioProject |
PRJNA248303 |
| SRA |
SRP042160 |
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