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Series GSE57874 Query DataSets for GSE57874
Status Public on May 22, 2014
Title Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Heart Stage
Organism Glycine max
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We performed small-RNA profiling of soybean seed regions and sub-regions, to gain new insights into the regulatory processes required for seed differentiation.
Overall design Eight subregions of the Heart stage of the soybean seeds were analyzed. Two biological replicates were collected for each subregions.
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
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Submission date May 21, 2014
Last update date May 15, 2019
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (16)
GSM1396276 Soybean Heart Stage Endothelium-biological replicate 1
GSM1396277 Soybean Heart Stage Endothelium-biological replicate 2
GSM1396278 Soybean Heart Stage Embryo Proper-biological replicate 1
BioProject PRJNA248303
SRA SRP042160

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57874_RAW.tar 85.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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