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Series GSE57845 Query DataSets for GSE57845
Status Public on May 21, 2014
Title Genome-Wide Small RNA Profiling of a Soybean Seed Compartment-Globular Stage
Organism Glycine max
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We performed small-RNA profiling of soybean seed regions and sub-regions, to gain new insights into the regulatory processes required for seed differentiation.
 
Overall design Six subregions of the Globular stage of the soybean seeds were analyzed. Two biological replicates were collected for each subregions.
 
Contributor(s) Harada JJ, Goldberg RB, Kirkbride R, Pelletier J, Wang TY, Hsu S, Chang S, Baden RW, Uzawa R, Olson A, Balayan L, Garber E, Hashimoto M, Chau U
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Submission date May 20, 2014
Last update date Dec 07, 2016
Contact name John Harada
E-mail jjharada@ucdavis.edu
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (12)
GSM1394967 Soybean Globular Stage Endosperm-biological replicate 3
GSM1394968 Soybean Globular Stage Endosperm-biological replicate 4
GSM1394969 Soybean Globular Stage Seed Coat Hilum-biological replicate 1
Relations
BioProject PRJNA248218
SRA SRP042127

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE57845_RAW.tar 81.5 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file

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