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Series GSE48855 Query DataSets for GSE48855
Status Public on Nov 23, 2015
Title Whole genome expression signature of SWCNT and MWCNT vs. asbestos subchronic exposures to human pleural mesothelial cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Malignant mesothelioma is one of the most aggressive forms of cancer known. Recent studies have shown that carbon nanotubes (CNTs) are biopersistent and induce mesothelioma in animals, but the underlying mechanisms are not known. Here, we investigate the effect of long-term exposure to CNTs on the aggressive behaviors of human pleural mesothelial cells, the primary cellular target of human lung mesothelioma. We show that sub-chronic exposure (4 month) to single- and multi-walled CNTs induced proliferation, migration and invasion of the cells similar to that observed in asbestos-exposed cells. An up-regulation of several key genes known to be important in cell invasion, notably matrix metalloproteinase-2 (MMP-2), was observed in the exposed mesothelial cells as determined by real-time PCR. Western blot and enzyme activity assays confirmed the increased expression and activity of MMP-2. Whole genome expression microarray analysis further indicated the importance of MMP-2 in the invasion gene signaling network of the exposed cells. Knockdown of MMP-2 in CNT and asbestos-exposed cells by shRNA-mediated gene silencing effectively inhibited the aggressive phenotypes. This study provides new evidence for CNT-induced cell invasion and indicates the role of MMP-2 in the process.
 
Overall design Whole genome expression profiling was conducted on human immortalized pleural mesothelial cells (MeT5A) following 4 month in vitro sub-chronic exposure to six separate treatments to assess differences in carbon nanotube (CNT) vs. asbestos potential tumorigenesis signaling. Dispersed single wall CNT (D-SWCNT), multi-wall CNT (D-MWCNT), crocidolite asbestos (ASB) and saline (SAL) exposed cells were compared to Survanta® dispersant (DISP) passage control cells. DISP and SAL cells served as control treatments for CNT- and ASB-exposed cells, respectively. Each treatment possessed 3 biological cDNA replicates. One technical replicate was performed per biological sample.
 
Contributor(s) Stueckle TA, Rojanasakul LW
Citation(s) 23924264
Submission date Jul 14, 2013
Last update date Nov 23, 2015
Contact name Todd A Stueckle
E-mail(s) tstueckle@cdc.gov
Phone 304 285-6098
Organization name National Institute for Occupational Safety and Health
Department Health Effects Laboratory Division
Lab Pathology and Physiology Research Branch
Street address 1095 Willowdale Road
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platforms (1)
GPL10191 NimbleGen Homo sapiens HG18 090828 opt expr HX12 (12x135k)
Samples (15)
GSM1185685 MeT5A_saline_4month_rep1
GSM1185686 MeT5A_saline_4month_rep2
GSM1185687 MeT5A_saline_4month_rep3
Relations
BioProject PRJNA212005

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48855_RAW.tar 52.8 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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