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Series GSE46841 Query DataSets for GSE46841
Status Public on Sep 20, 2013
Title DNA replication and DSB factor binding in the meiotic S-phase checkpoint in budding yeast
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by genome tiling array
Genome variation profiling by genome tiling array
Summary During gamete formation, crossover recombination must occur on replicated DNA to ensure proper chromosome segregation in the first meiotic division. We identified a Mec1/ATR-dependent replication checkpoint in budding yeast that prevented the earliest stage of recombination, the programmed induction of DNA double-strand breaks (DSBs), when pre-meiotic DNA replication was delayed. The checkpoint suppressed DSBs through three complementary mechanisms: inhibition of Mer2 phosphorylation by Dbf4-dependent Cdc7 kinase, preclusion of chromosomal loading of Rec114 and Mre11, and lowered abundance of the Spo11 nuclease. Without this checkpoint, cells formed DSBs on partially replicated chromosomes. Importantly, such DSBs frequently failed to be repaired and impeded further DNA synthesis, leading to a rapid loss in cell viability. We conclude that a checkpoint-dependent constraint of DSB formation to duplicated DNA is critical not only for meiotic chromosome assortment, but also to protect genome integrity during gametogenesis.
 
Overall design DSB factor association was measured in wild-type and checkpoint mutants strains under non-inducing or replication checkpoint inducing conditions. Additionally, DNA replication and helicase loading were measured in a replication and checkpoint deficient strain (cdc6-mn).
 
Contributor(s) Blitzblau HG, Hochwagen A
Citation(s) 24137535
Submission date May 10, 2013
Last update date Jul 18, 2017
Contact name Andreas Hochwagen
E-mail(s) andi@nyu.edu
Organization name New York University
Lab Hochwagen lab
Street address 1009 Silver Center 100 Washington Square East
City New York
State/province NY
ZIP/Postal code 10003
Country USA
 
Platforms (1)
GPL5991 Agilent-015239 Yeast Whole Genome ChIP-on-chip Microarray (G4493A)
Samples (31)
GSM1139046 Mer2_1
GSM1139047 Mer2_2
GSM1139048 Mer2_HU_1
This SuperSeries is composed of the following SubSeries:
GSE46839 ChIP-chip of DSB factors in the presence and absence of S phase checkpoint induction
GSE46840 CGH mesurement of DNA replication in wild-type and cdc6-mn replication deficient strains.
Relations
BioProject PRJNA202447

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46841_RAW.tar 372.6 Mb (http)(custom) TAR (of TXT)

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