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Series GSE43579 Query DataSets for GSE43579
Status Public on Aug 04, 2013
Title Genome-wide maps of HSF1 and HSF2 binding sites in cycling and mitotic human K562 cells in optimal growth conditions and upon heat stress
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Genome-wide characterization of binding sites for heat shock transcription factors HSF1 and HSF2 in freely cycling and mitotic K562 cells in optimal growth conditions and upon 30 min heat stress at 42C
Overall design Examination of HSF1 and HSF2 target loci in non-treated and heat treated K562 cells that are either unsynchronized (cycling) or synchronized to mitosis (mitotic). Input serves as background control, IgG is used as negative antibody control.
Contributor(s) Vihervaara A, Sergelius C, Sistonen L
Citation(s) 23959860
Submission date Jan 17, 2013
Last update date May 15, 2019
Contact name Anniina Vihervaara
Phone +358 50 5463694
Organization name KTH Royal Institute of Technology
Department Gene Technology
Lab Vihervaara
Street address Tomtebodavägen 23A
City Stockholm
ZIP/Postal code 17165
Country Sweden
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (14)
GSM1065711 HSF1_non-treated cycling K562
GSM1065712 HSF2_non-treated cycling K562
GSM1065713 IgG_non-treated cycling K562
BioProject PRJNA186755
SRA SRP018017

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43579_RAW.tar 4.8 Gb (http)(custom) TAR (of TDF, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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