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GEO accession:
Series GSE43506
Query DataSets for GSE43506
Status
Public on Jan 16, 2013
Title
Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression
Organism
Drosophila melanogaster
Experiment type
Expression profiling by high throughput sequencing
Summary
We sequenced mRNA from transverse slices of embryos at the blastoderm stage to determine genome-wide patterns of gene expression.
Overall design
mRNA from transverse sections of single D. melanogaster embryos was sequenced
Contributor(s)
Combs PA
,
Eisen MB
Citation(s)
23951250
Submission date
Jan 15, 2013
Last update date
May 15, 2019
Contact name
Peter Acuña Combs
E-mail(s)
pcombs@stanford.edu
Organization name
Stanford University
Department
Biology
Lab
Hunter Fraser
Street address
Gilbert Rm 309, 371 Serra Mall
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platforms (1)
GPL13304
Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (122)
Less...
More...
GSM1064531
WT Rep 1 Slice 1
GSM1064532
WT Rep 1 Slice 2
GSM1064533
WT Rep 1 Slice 3
GSM1064534
WT Rep 1 Slice 4
GSM1064535
WT Rep 1 Slice 5
GSM1064536
WT Rep 1 Slice 6
GSM1064537
WT Rep 2 Slice 1
GSM1064538
WT Rep 2 Slice 2
GSM1064539
WT Rep 2 Slice 3
GSM1064540
WT Rep 2 Slice 4
GSM1064541
WT Rep 2 Slice 5
GSM1064542
WT Rep 2 Slice 6
GSM1064543
WT Rep 3 Slice 1
GSM1064544
WT Rep 3 Slice 2
GSM1064545
WT Rep 3 Slice 3
GSM1064546
WT Rep 3 Slice 4
GSM1064547
WT Rep 3 Slice 5
GSM1064548
WT Rep 3 Slice 6
GSM1064549
Bcd6x Rep 1 Slice 1
GSM1064550
Bcd6x Rep 1 Slice 2
GSM1064551
Bcd6x Rep 1 Slice 3
GSM1064552
Bcd6x Rep 1 Slice 4
GSM1064553
Bcd6x Rep 1 Slice 5
GSM1064554
Bcd6x Rep 2 Slice 1
GSM1064555
Bcd6x Rep 2 Slice 2
GSM1064556
Bcd6x Rep 2 Slice 3
GSM1064557
Bcd6x Rep 2 Slice 4
GSM1064558
Bcd6x Rep 2 Slice 5
GSM1064559
Bcd6x Rep 2 Slice 6
GSM1064560
Bcd6x Rep 2 Slice 7
GSM1064561
Bcd6x Rep 3 Slice 1
GSM1064562
Bcd6x Rep 3 Slice 2
GSM1064563
Bcd6x Rep 3 Slice 3
GSM1064564
Bcd6x Rep 3 Slice 4
GSM1064565
Bcd6x Rep 3 Slice 5
GSM1128928
Fine Sliced Embryo 1 slice 1
GSM1128929
Fine Sliced Embryo 1 slice 2
GSM1128930
Fine Sliced Embryo 1 slice 3
GSM1128931
Fine Sliced Embryo 1 slice 4
GSM1128932
Fine Sliced Embryo 1 slice 5
GSM1128933
Fine Sliced Embryo 1 slice 6
GSM1128934
Fine Sliced Embryo 1 slice 7
GSM1128935
Fine Sliced Embryo 1 slice 8
GSM1128936
Fine Sliced Embryo 1 slice 9
GSM1128937
Fine Sliced Embryo 1 slice 10
GSM1128938
Fine Sliced Embryo 1 slice 11
GSM1128939
Fine Sliced Embryo 1 slice 12
GSM1128940
Fine Sliced Embryo 1 slice 13
GSM1128941
Fine Sliced Embryo 1 slice 14
GSM1128942
Fine Sliced Embryo 2 slice 1
GSM1128943
Fine Sliced Embryo 2 slice 2
GSM1128944
Fine Sliced Embryo 2 slice 3
GSM1128945
Fine Sliced Embryo 2 slice 4
GSM1128946
Fine Sliced Embryo 2 slice 5
GSM1128947
Fine Sliced Embryo 2 slice 6
GSM1128948
Fine Sliced Embryo 2 slice 7
GSM1128949
Fine Sliced Embryo 2 slice 8
GSM1128950
Fine Sliced Embryo 2 slice 9
GSM1128951
Fine Sliced Embryo 2 slice 10
GSM1128952
Fine Sliced Embryo 2 slice 11
GSM1128953
Fine Sliced Embryo 3 slice 1
GSM1128954
Fine Sliced Embryo 3 slice 2
GSM1128955
Fine Sliced Embryo 3 slice 3
GSM1128956
Fine Sliced Embryo 3 slice 4
GSM1128957
Fine Sliced Embryo 3 slice 5
GSM1128958
Fine Sliced Embryo 3 slice 6
GSM1128959
Fine Sliced Embryo 3 slice 7
GSM1128960
Fine Sliced Embryo 3 slice 8
GSM1128961
Fine Sliced Embryo 3 slice 9
GSM1128962
Fine Sliced Embryo 3 slice 10
GSM1128963
Fine Sliced Embryo 3 slice 11
GSM1128964
Fine Sliced Embryo 4 slice 1
GSM1128965
Fine Sliced Embryo 4 slice 2
GSM1128966
Fine Sliced Embryo 4 slice 3
GSM1128967
Fine Sliced Embryo 4 slice 4
GSM1128968
Fine Sliced Embryo 4 slice 5
GSM1128969
Fine Sliced Embryo 4 slice 6
GSM1128970
Fine Sliced Embryo 4 slice 7
GSM1128971
Fine Sliced Embryo 4 slice 8
GSM1128972
Fine Sliced Embryo 4 slice 9
GSM1128973
Fine Sliced Embryo 4 slice 10
GSM1128974
Fine Sliced Embryo 4 slice 11
GSM1128975
Fine Sliced Embryo 4 slice 12
GSM1128976
Fine Sliced Embryo 4 slice 13
GSM1128977
Fine Sliced Embryo 4 slice 14
GSM1128978
Fine Sliced Embryo 4 slice 15
GSM1128979
Fine Sliced Embryo 5 slice 1
GSM1128980
Fine Sliced Embryo 5 slice 2
GSM1128981
Fine Sliced Embryo 5 slice 3
GSM1128982
Fine Sliced Embryo 5 slice 4
GSM1128983
Fine Sliced Embryo 5 slice 5
GSM1128984
Fine Sliced Embryo 5 slice 6
GSM1128985
Fine Sliced Embryo 5 slice 7
GSM1128986
Fine Sliced Embryo 5 slice 8
GSM1128987
Fine Sliced Embryo 5 slice 9
GSM1128988
Fine Sliced Embryo 5 slice 10
GSM1128989
Fine Sliced Embryo 6 slice 1
GSM1128990
Fine Sliced Embryo 6 slice 2
GSM1128991
Fine Sliced Embryo 6 slice 3
GSM1128992
Fine Sliced Embryo 6 slice 4
GSM1128993
Fine Sliced Embryo 6 slice 5
GSM1128994
Fine Sliced Embryo 6 slice 6
GSM1128995
Fine Sliced Embryo 6 slice 7
GSM1128996
Fine Sliced Embryo 6 slice 8
GSM1128997
Fine Sliced Embryo 6 slice 9
GSM1128998
Fine Sliced Embryo 6 slice 10
GSM1128999
Fine Sliced Embryo 6 slice 11
GSM1129000
Fine Sliced Embryo 6 slice 12
GSM1129001
Fine Sliced Embryo 6 slice 13
GSM1129002
Fine Sliced Embryo 7 slice 1
GSM1129003
Fine Sliced Embryo 7 slice 2
GSM1129004
Fine Sliced Embryo 7 slice 3
GSM1129005
Fine Sliced Embryo 7 slice 4
GSM1129006
Fine Sliced Embryo 7 slice 5
GSM1129007
Fine Sliced Embryo 7 slice 6
GSM1129008
Fine Sliced Embryo 7 slice 7
GSM1129009
Fine Sliced Embryo 7 slice 8
GSM1129010
Fine Sliced Embryo 7 slice 9
GSM1129011
Fine Sliced Embryo 7 slice 10
GSM1129012
Fine Sliced Embryo 7 slice 11
GSM1129013
Fine Sliced Embryo 7 slice 12
GSM1129014
Fine Sliced Embryo 7 slice 13
Relations
BioProject
PRJNA186618
SRA
SRP017950
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE43506_FineEmbryoSlice_genes.cuff.gz
3.1 Mb
(ftp)
(http)
CUFF
GSE43506_RAW.tar
50.9 Mb
(http)
(custom)
TAR (of CUFF)
GSE43506_README.txt
2.2 Kb
(ftp)
(http)
TXT
GSE43506_genes.cuff.gz
1.3 Mb
(ftp)
(http)
CUFF
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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