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Series GSE43506 Query DataSets for GSE43506
Status Public on Jan 16, 2013
Title Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNA from transverse slices of embryos at the blastoderm stage to determine genome-wide patterns of gene expression.
Overall design mRNA from transverse sections of single D. melanogaster embryos was sequenced
Contributor(s) Combs PA, Eisen MB
Citation(s) 23951250
Submission date Jan 15, 2013
Last update date May 15, 2019
Contact name Peter Acuña Combs
Organization name Stanford University
Department Biology
Lab Hunter Fraser
Street address Gilbert Rm 309, 371 Serra Mall
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (122)
GSM1064531 WT Rep 1 Slice 1
GSM1064532 WT Rep 1 Slice 2
GSM1064533 WT Rep 1 Slice 3
BioProject PRJNA186618
SRA SRP017950

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43506_FineEmbryoSlice_genes.cuff.gz 3.1 Mb (ftp)(http) CUFF
GSE43506_RAW.tar 50.9 Mb (http)(custom) TAR (of CUFF)
GSE43506_README.txt 2.2 Kb (ftp)(http) TXT
GSE43506_genes.cuff.gz 1.3 Mb (ftp)(http) CUFF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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