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| Status |
Public on May 01, 2023 |
| Title |
Gene expression and mutation profiles in HRR mutated recurrent ovarian cancers |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
RNA sequencing and whole-exome sequencing data were obtained from 30 platinum-resistant recurrent ovarian cancer samples.
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| Overall design |
Pretreatment tumors samples from fresh-frozen tissue were obtained for whole-transcriptome sequencing and whole-exome sequencing. RNA and DNA samples were sequenced on HiSeq 2500 sequencing platform. For RNA-seq, sequencing reads were aligned to the human reference genome (GRCh37) by using STAR aligner. Expected counts of reads mapped into genes were estimated and transformed into TPM values by RSEM. For whole exome sequencing, sequenced reads were aligned to the reference human genome (GRCh37) using the Burrows-Wheeler Aligner (BWA). After pre-processing using the Genome Analysis Toolkit (GATK), variants were called by Mutect2.
>>>Raw data for human samples not available due to patient privacy concerns<<<
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| Contributor(s) |
Lee JY |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Apr 25, 2023 |
| Last update date |
May 01, 2023 |
| Contact name |
Je-Gun Joung |
| E-mail(s) |
jegunjoung@gmail.com
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| Organization name |
CHA University
|
| Street address |
335, Pangyo-ro, Bundang-gu
|
| City |
Seongnam-si |
| ZIP/Postal code |
13496 |
| Country |
South Korea |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (60)
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| Relations |
| BioProject |
PRJNA961730 |
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