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Series GSE230506 Query DataSets for GSE230506
Status Public on Aug 24, 2023
Title Long- and short-read RNA sequencing from five reproductive organs of boar.
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary PacBio SMRTseq long reads and Illumina short reads of pig testis, epididymis, vesicular gland, prostate gland, and bulbourethral gland
 
Overall design Use PacBio IsoSeq to sequence pig testis, epididymis, vesicular gland, prostate gland, and bulbourethral gland RNAs
 
Contributor(s) Huo J, Sun YH, Liu Z, Zhang X
Citation(s) 37798273
Submission date Apr 25, 2023
Last update date Oct 10, 2023
Contact name Huo Jinlong
E-mail(s) jinlonghuo973@gmail.com
Organization name Yunnan Agricultural University
Street address Jinhei Road 95
City Yunnan Kunming
ZIP/Postal code 650201
Country China
 
Platforms (3)
GPL11429 Illumina HiSeq 2000 (Sus scrofa)
GPL26351 Illumina NovaSeq 6000 (Sus scrofa)
GPL31248 Sequel II (Sus scrofa)
Samples (70)
GSM7225575 BMI_Tes_PacBio
GSM7225576 DSE_Tes_PacBio
GSM7225577 BMI_Epi_PacBio
Relations
BioProject PRJNA961656

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE230506_RNAseq_expression.tpm.txt.gz 9.0 Mb (ftp)(http) TXT
GSE230506_Summary_PacBio.txt.gz 11.7 Mb (ftp)(http) TXT
GSE230506_TranscriptomeAssembly.PacBio.gtf.gz 17.2 Mb (ftp)(http) GTF
GSE230506_Transcriptome_sequences_PacBio.fa.gz 35.4 Mb (ftp)(http) FA
GSE230506_miRNAseq_expression.rpm.txt.gz 38.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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