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Series GSE22803 Query DataSets for GSE22803
Status Public on Dec 01, 2010
Title Expression data from roots and first two leaves of tomato seedlings growing on regular MS medium or MS medium supplemented with multi-wall carbon nanotubes (0, 50, 100, 200 ug/ml) or activated carbon (50 mg/ml)
Organism Solanum lycopersicum
Experiment type Expression profiling by array
Summary To investigate effects of carbon nanotubes (CNTs) om total expression profile of tomato plants we introduced CNTs in MS agar medium in concentrationd 0, 50, 100, 200 ug/ml
Objectives for this study included the identification of genes that were up or down-regulated at the transcriptional level in tomato seedlings in response to carnom nanotubes (CNTs).
Overall design 10 day old root tips and first two leaves of wild type tomato seedlings (cv. Micro-Tom) growing on regular MS agar medium or MS medium supplemented with carbon nanotubes (50, 100, 200 ug/ml) or MS medium supplemented with activated carbon (50 ug/ml) were selected for RNA extraction and hybridization on Affymetrix microarrays.
Contributor(s) Khodakovskaya M
Citation(s) 21189303
Submission date Jul 07, 2010
Last update date Dec 24, 2015
Contact name Mariya Khodakovskaya
Phone 501-371-7506
Fax 501-569-8020
Organization name University of Arkansas at Little Rock
Department Applied Science
Street address 2801 S. University Avenue
City Little Rock
State/province AR
ZIP/Postal code 72204
Country USA
Platforms (1)
GPL4741 [Tomato] Affymetrix Tomato Genome Array
Samples (20)
GSM563723 Roots -control rep.1
GSM563724 Roots -control rep.2
GSM563725 Roots-CNTs (50 ug/ml) rep.1
BioProject PRJNA127919

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE22803_RAW.tar 19.1 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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