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Series GSE226721 Query DataSets for GSE226721
Status Public on May 09, 2023
Title Effect of GSK3368715 on GBM patient samples, kept in a novel perfusion device for 8-days
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Glioblastoma patient samples were microdissected into ~20mg pieces and put onto a novel perfusion device, within an hour of resection. Samples were left for 8 days, at a flow rate of 3ul/min, with a media change at day 4. Treatment was with 1uM GSK3368715. Please refer to Barry et al. Lab-on-chip 2023 for details.
 
Overall design Four patient GBM samples were treated with 1 uM GSK3368715, or DMSO control via the media supplying the microfluidics system. Samples were numbered 4 to 7, which correspond to patients D31 to D34. Please refer to Barry et al. Lab-on-chip 2023 for details.
Web link https://pubs.rsc.org/en/content/articlelanding/2023/LC/D3LC00204G
 
Contributor(s) Beltran-Alvarez P, Barry A
Citation(s) 37191188
Submission date Mar 06, 2023
Last update date May 17, 2023
Contact name Pedro Beltran-Alvarez
E-mail(s) p.beltran-alvarez@hull.ac.uk
Organization name University of Hull
Department HYMS Centre for Biomedicine
Lab Hardy 124
Street address University of Hull, Cottingham Road
City Hull
ZIP/Postal code HU6 7RX
Country United Kingdom
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (8)
GSM7082594 GBM_CTRL_D31(CTRL4)
GSM7082595 GBM_GSK715_D31(EXP4)
GSM7082596 GBM_CTRL_D32(CTRL5)
Relations
BioProject PRJNA941284

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE226721_EXP4vsCTRL4_deg.txt.gz 2.3 Mb (ftp)(http) TXT
GSE226721_EXP5vsCTRL5_deg.txt.gz 2.2 Mb (ftp)(http) TXT
GSE226721_EXP6vsCTRL6_deg.txt.gz 2.4 Mb (ftp)(http) TXT
GSE226721_EXP7vsCTRL7_deg.txt.gz 2.2 Mb (ftp)(http) TXT
GSE226721_gene_count.txt.gz 2.4 Mb (ftp)(http) TXT
GSE226721_gene_fpkm.txt.gz 3.9 Mb (ftp)(http) TXT
GSE226721_gene_fpkm_group.txt.gz 4.5 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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