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Series GSE181030 Query DataSets for GSE181030
Status Public on Oct 06, 2021
Title Genome-wide screening and characterization of Actinobacillus pleuropneumoniae and its ciprofloxacin-resistant mutants
Organism Actinobacillus pleuropneumoniae
Experiment type Expression profiling by high throughput sequencing
Summary Understanding constraints which shape antibiotic resistance is key for predicting and controlling drug resistance. Here, we performed high-throughput laboratory evolution of Actinobacillus pleuropneumoniae and its ciprofloxacin resistance-inducing derivatives.This study aims to explore the mechanism of acquired ciprofloxacin resistance in Actinobacillus pleuropneumoniae.
 
Overall design APP strain SC1810 and its ciprofloxacin-resistance mutant
 
Contributor(s) Zheng B, Wang J, Ma X
Citation(s) 34576206
Submission date Jul 28, 2021
Last update date Oct 06, 2021
Contact name Bowen Zheng
E-mail(s) zhengbowen@stu.sicau.edu.cn
Organization name Sichuan
Department Sichuan Agricultural University
Street address Rm.22,Area 3,Sichuan agricultural University,No.46 Xinkang Road,Yucheng District,Ya'an City,Sichuan
City Yucheng
ZIP/Postal code 625000
Country China
 
Platforms (1)
GPL30447 Illumina NovaSeq 6000 (Actinobacillus pleuropneumoniae)
Samples (6)
GSM5482244 SC1810_rep1
GSM5482245 SC1810_rep2
GSM5482246 SC1810_rep3
Relations
BioProject PRJNA750431
SRA SRP330237

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE181030_All_gene_rpkm_detail.txt.gz 85.4 Kb (ftp)(http) TXT
GSE181030_SC1810_chr.gene.fasta.gz 647.3 Kb (ftp)(http) FASTA
GSE181030_SC1810_chr.gff3.gz 54.2 Kb (ftp)(http) GFF3
GSE181030_ref_trans_full_table.txt.gz 396.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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