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Series GSE179485 Query DataSets for GSE179485
Status Public on Jul 19, 2021
Title Genomic context sensitivity of insulator function
Organism Homo sapiens
Experiment type Other
Expression profiling by high throughput sequencing
Summary Analysis of randomly integrated barcoded enhancer blocker reporter activity in K562 cells
 
Overall design 5 replicate experiments, each consisting of a set of transfections of multiple distinct reporter constructs distinguished by 16 nt barcodes. Each transfection was profiled with DNA, RNA, and iPCR libraries; Experiments 4 and 5 also include 10x scRNA-seq.
 
Contributor(s) Maurano MT, Ribeiro-dos-Santos AM, Hogan MS, Luther RD
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 05, 2021
Last update date Dec 13, 2021
Contact name Matthew T Maurano
Organization name NYU Grossman School of Medicine
Department Institute for Systems Genetics
Lab Maurano lab
Street address 435 East 30th Street
City New York
State/province New York
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (183)
GSM5418897 Experiment1_GGlo_DNA [BS02212A]
GSM5418898 Experiment1_GGlo_DNA [BS02216A]
GSM5418899 Experiment1_GGlo_iPCR [BS02225A]
Relations
BioProject PRJNA743932
SRA SRP327040

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179485_Experiment1_C1fw_GGlo_A1fw_HS2.activity.bw 319.3 Kb (ftp)(http) BW
GSE179485_Experiment1_C1fw_GGlo_A1rv_HS2.activity.bw 415.9 Kb (ftp)(http) BW
GSE179485_Experiment1_GGlo.activity.bw 948.7 Kb (ftp)(http) BW
GSE179485_Experiment1_GGlo_HS2.activity.bw 416.1 Kb (ftp)(http) BW
GSE179485_Experiment2_C1fw_GGlo_A1fw_HS2.activity.bw 257.5 Kb (ftp)(http) BW
GSE179485_Experiment2_C1fw_GGlo_A1rv_HS2.activity.bw 356.5 Kb (ftp)(http) BW
GSE179485_Experiment2_GGlo.activity.bw 371.8 Kb (ftp)(http) BW
GSE179485_Experiment2_GGlo_HS2.activity.bw 355.8 Kb (ftp)(http) BW
GSE179485_Experiment3_C1fw_GGlo_A1fw_HS2.activity.bw 324.8 Kb (ftp)(http) BW
GSE179485_Experiment3_GGlo.activity.bw 392.1 Kb (ftp)(http) BW
GSE179485_Experiment3_GGlo_HS2.activity.bw 263.8 Kb (ftp)(http) BW
GSE179485_Experiment4_C1fw_GGlo_A1rv_HS2.activity.bw 445.4 Kb (ftp)(http) BW
GSE179485_Experiment5_GGlo_HS2.activity.bw 920.8 Kb (ftp)(http) BW
GSE179485_Experiment5_Ins_GGlo_HS2_Ins.activity.bw 423.6 Kb (ftp)(http) BW
GSE179485_Experiment5_Ins_GGlo_Ins_HS2.activity.bw 1.2 Mb (ftp)(http) BW
GSE179485_Experiment5_barcodes.tsv.gz 299.3 Kb (ftp)(http) TSV
GSE179485_Experiment5_features.tsv.gz 297.6 Kb (ftp)(http) TSV
GSE179485_Experiment5_matrix.mtx.gz 1.1 Gb (ftp)(http) MTX
GSE179485_merged_GGlo.activity.bw 1.4 Mb (ftp)(http) BW
GSE179485_merged_GGlo_HS2.activity.bw 1.5 Mb (ftp)(http) BW
GSE179485_merged_Ins_GGlo_Ins_HS2.activity.bw 3.5 Mb (ftp)(http) BW
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Raw data are available in SRA
Processed data are available on Series record
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