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Series GSE163100 Query DataSets for GSE163100
Status Public on Dec 22, 2021
Title Autoinflammatory keratinization disease with hepatitis and autism reveals roles for JAK1 kinase hyperactivity in autoinflammation.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Clinical observations reinforced by analysis of a knock-in mouse model confirm the crucial role of JAK1 in regulating physiological inflammatory processes. The present findings expand the phenotypic spectrum resulted from JAK1 hyperactivation and further underscore how gain-of-function JAK1 mutations contribute to multisystem autoinflammation.
 
Overall design RNA sequencing was performed using extracted RNA from the brain, liver, and skin of newborn Jak1 knock in (KI) mice (Jak1H595D/+;I596I/+;Y597Y/+) and wild type (WT) mice . We performed a gene set enrichment analysis using the hallmark gene set database.
 
Contributor(s) Takeichi T, Lee JY, Okuno Y, Akiyama M
Citation(s) 35046931
Submission date Dec 13, 2020
Last update date Jan 31, 2022
Contact name Takuya Takeichi
E-mail(s) takeichi@med.nagoya-u.ac.jp
Phone +81-52-744-2314
Organization name Nagoya University Graduate of School
Street address 65 Tsurumai-cho, Showa-ku
City Nagoya
ZIP/Postal code 466-8550
Country Japan
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (21)
GSM4972081 Brain KI 1
GSM4972082 Liver KI 1
GSM4972083 Skin KI 1
Relations
BioProject PRJNA684903
SRA SRP297788

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163100_RAW.tar 2.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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