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Series GSE15814 Query DataSets for GSE15814
Status Public on Jun 06, 2009
Title High resolution analysis of epigenetic changes associated with X inactivation, ChIP-Seq
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This study describes the epigenetic profiling of the X chromosome during X inactivation. It includes H3K4me3 and H3K27me3 ChIP-Seq profiles of male (E14) and female (LF2 and XT67E1) mouse ES cells, together with their differentiated derivatives (either 4d atRA or 10d EB). It also includes ChIP-chip profiles around the Xic on chromosome X of H3K4me3, H3K27me3, H3K9me2, H3K36me3, Pol II, TBP, H3-Core as well as expression, using male (E14) and female (LF2) mouse ES cells, together with their differentiated derivatives (either 4d atRA or 10d EB).
 
Overall design Examination of two different histone modifications in 3 cell lines under 3 conditions using ChIP-Seq. Examination of five different histone modifications two transcription factors and gene expression under three conditions in 2 cell lines using ChIP-chip.
 
Contributor(s) Marks H, Chow JC, Fran├žoijs K, Denissov S, Brockdorff N, Heard E, Stunnenberg HG
Citation(s) 19581487
Submission date Apr 24, 2009
Last update date May 15, 2019
Contact name H.G. Stunnenberg
E-mail h.stunnenberg@ncmls.ru.nl
Phone +31-24-3610520
Organization name Radboud University
Department Department of Molecular Biology (274)
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country USA
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (10)
GSM397402 H3K4me3_ChIP-Seq_XT67E1_undiff
GSM397403 H3K4me3_ChIP-Seq_XT67E1_4d-atRA
GSM397404 H3K4me3_ChIP-Seq_XT67E1_10d-EB
This SubSeries is part of SuperSeries:
GSE15884 High resolution analysis of epigenetic changes associated with X inactivation
Relations
SRA SRP001002
BioProject PRJNA123057

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15814_RAW.tar 427.3 Mb (http)(custom) TAR (of BED, WIG)
Processed data provided as supplementary file
Raw data are available in SRA

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