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| Status |
Public on Sep 17, 2021 |
| Title |
Next-Generation Sequencing Facilitates Quantitative Analysis of Two Kinds of Chenopodium quinoa Transcriptomes |
| Organism |
Chenopodium quinoa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We generated 95.37 Gb of high-quality sequencing data (~7.95 Gb per sample). The analysis showed differences of transcriptomes between the common white sweet quinoa and the yellow bitter quinoa. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in taste of quinoa fruit.Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to the accumulation of bitter saponins in C. quinoa fruits.
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| Overall design |
Two kinds of quinoa (the common white sweet quinoa and the yellow bitter quinoa) flowers and fruits mRNA profiles were generated by deep sequencing, in triplicate, using Illumina HiSeq4000.
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| Contributor(s) |
Liu M |
| Citation(s) |
33842016 |
| |
| Submission date |
Oct 21, 2019 |
| Last update date |
Sep 17, 2021 |
| Contact name |
Moyang Liu |
| E-mail(s) |
cooljeep@sjtu.edu.cn
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| Organization name |
Shanghai Jiao Tong University
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| Department |
School of Agriculture and Biology
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| Street address |
dongchuan road 800
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| City |
Shanghai |
| ZIP/Postal code |
200240 |
| Country |
China |
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| Platforms (1) |
| GPL26301 |
Illumina HiSeq 4000 (Chenopodium quinoa) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA578698 |
| SRA |
SRP226463 |
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