|
| Status |
Public on Nov 03, 2019 |
| Title |
ATAC-Seq of neuroblastoma cell lines. |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ATAC-Seq of neuroblastoma cell lines.
|
| |
|
| Overall design |
ATAC-Seq of 14 neuroblastoma cell lines.
|
| |
|
| Contributor(s) |
Rokita JL, Upton K, Maris JM |
| Citation(s) |
32286315 |
|
Kristen Upton, Apexa Modi, Khushbu Patel, Karina L. Conkrite, Robyn T. Sussman, Gregory P. Way, Rebecca N. Adams, Gregory I. Sacks, Paolo Fortina, Sharon J. Diskin, John M. Maris, and Jo Lynne Rokita. Epigenomic profiling of neuroblastoma cell lines. bioRxiv 829754; doi:10.1101/829754.
|
| |
| Submission date |
Oct 02, 2019 |
| Last update date |
Apr 27, 2020 |
| Contact name |
Jo Lynne Rokita |
| E-mail(s) |
rokita@chop.edu
|
| Organization name |
Children's Hospital of Philadelphia
|
| Street address |
3501 Civic Center Blvd
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (28)
|
|
| This SubSeries is part of SuperSeries: |
| GSE138315 |
Epigenomic profiling of neuroblastoma cell lines |
|
| Relations |
| BioProject |
PRJNA575353 |
| SRA |
SRP223941 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE138293_COGN415.macs2.dnase.broad.SPMR.sorted.bw |
658.0 Mb |
(ftp)(http) |
BW |
| GSE138293_COGN440.macs2.dnase.broad.SPMR.sorted.bw |
216.8 Mb |
(ftp)(http) |
BW |
| GSE138293_COGN453.macs2.dnase.broad.SPMR.sorted.bw |
545.5 Mb |
(ftp)(http) |
BW |
| GSE138293_KELLY.macs2.dnase.broad.SPMR.sorted.bw |
346.1 Mb |
(ftp)(http) |
BW |
| GSE138293_LAN5.macs2.dnase.broad.SPMR.sorted.bw |
300.7 Mb |
(ftp)(http) |
BW |
| GSE138293_NB1.macs2.dnase.broad.SPMR.sorted.bw |
276.8 Mb |
(ftp)(http) |
BW |
| GSE138293_NB1643.macs2.dnase.broad.SPMR.sorted.bw |
455.3 Mb |
(ftp)(http) |
BW |
| GSE138293_NB69.macs2.dnase.broad.SPMR.sorted.bw |
156.7 Mb |
(ftp)(http) |
BW |
| GSE138293_NBLS.macs2.dnase.broad.SPMR.sorted.bw |
275.1 Mb |
(ftp)(http) |
BW |
| GSE138293_NGP.macs2.dnase.broad.SPMR.sorted.bw |
196.5 Mb |
(ftp)(http) |
BW |
| GSE138293_SKNAS.macs2.dnase.broad.SPMR.sorted.bw |
401.0 Mb |
(ftp)(http) |
BW |
| GSE138293_SKNBE2C.macs2.dnase.broad.SPMR.sorted.bw |
421.5 Mb |
(ftp)(http) |
BW |
| GSE138293_SKNFI.macs2.dnase.broad.SPMR.sorted.bw |
362.5 Mb |
(ftp)(http) |
BW |
| GSE138293_SKNSH.macs2.dnase.broad.SPMR.sorted.bw |
506.1 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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