GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE138278 Query DataSets for GSE138278
Status Public on Mar 03, 2020
Title Ribosome profiling of Streptomyces griseus NBRC13350 and Streptomyces venezuelae ATCC15439
Organisms Streptomyces griseus; Streptomyces venezuelae
Experiment type Expression profiling by high throughput sequencing
Summary We performed ribosome profiling which is the deep-sequencing of mRNA fragments protected by translating ribosome for two Streptomyces species through different growth phases to provide the translatome data
Overall design Ribosome profiling data of Streptomyces griseus NBRC13350 and Streptomyces venezuelae ATCC15439 at four different growth phases in duplicates using Illumina HiSeq
Contributor(s) Hwang S, Lee N, Lee Y, Kim W, Cho S, Palsson BO, Cho B
Citation(s) 32385251
Submission date Oct 01, 2019
Last update date May 18, 2020
Contact name Soonkyu Hwang
Organization name KAIST
Department Biological Sciences
Street address 291 Daehakro, Yuseong-gu
City Daejeon
ZIP/Postal code 34141
Country South Korea
Platforms (2)
GPL27559 Illumina HiSeq 2500 (Streptomyces griseus)
GPL27560 Illumina HiSeq 2500 (Streptomyces venezuelae)
Samples (16)
GSM4104306 SgriRibo_E1
GSM4104307 SgriRibo_E2
GSM4104308 SgriRibo_T1
BioProject PRJNA575265
SRA SRP223903

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138278_Sgri_Ribo_ETLS_readcount.txt.gz 107.3 Kb (ftp)(http) TXT
GSE138278_Sven_Ribo_ETLS_readcount.txt.gz 110.6 Kb (ftp)(http) TXT
GSE138278_Sven_Ribo_gene_expression.txt.gz 911.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap