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Series GSE136831 Query DataSets for GSE136831
Status Public on May 12, 2020
Title IPF Cell Atlas
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Single Cell RNAseq of Whole Lung Dissociates from IPF, COPD and control lungs
Overall design Exploratory analysis of disease and healthy lung cell populations
Web link
Contributor(s) Adams T, Schupp J, Kaminski N, Rosas I
Citation(s) 32832599, 35887096, 35930670
Adams et al. Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. Science Advances July, 8, 2020.
Submission date Sep 04, 2019
Last update date Dec 05, 2022
Contact name Naftali Kaminski
Organization name Yale School of Medicine
Department PCCSM
Lab Kaminski
Street address 300 Cedar Street
City New Haven
State/province CT
ZIP/Postal code 06509
Country USA
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (78)
GSM4058900 133C scRNAseq
GSM4058901 1372C scRNAseq
GSM4058902 034C scRNAseq
BioProject PRJNA563828
SRA SRP395406

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136831_AllCells.GeneIDs.txt.gz 316.3 Kb (ftp)(http) TXT
GSE136831_AllCells.Samples.CellType.MetadataTable.txt.gz 4.1 Mb (ftp)(http) TXT
GSE136831_AllCells.cellBarcodes.txt.gz 1.3 Mb (ftp)(http) TXT
GSE136831_RAW.tar 16.4 Gb (http)(custom) TAR (of RDS)
GSE136831_RawCounts_Sparse.mtx.gz 2.0 Gb (ftp)(http) MTX
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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