|
| Status |
Public on Jan 08, 2020 |
| Title |
Non-coding Transcriptional profiling of the adult mouse retina in wild-type and Nrl deficient mice |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We performed non-coding transcriptional profiling to identify Nrl-dependent ncRNAs by deep sequencing non-polyadenylated RNA from the same control and Nrl-/- retinal samples. non-coding RNA profiling is a robust method for the identification of cell-type specific functional enhancer elements in the mouse retina
|
| |
|
| Overall design |
Examination of non-coding differential expression between 5 wild-type and 6 knockout samples
|
| Web link |
https://doi.org/10.1242/dev.184432
|
| |
|
| Contributor(s) |
Perez-Cervantes C, Smith LA, Nadadur RD, Moskowitz IP |
| Citation(s) |
31915147 |
| |
| Submission date |
Aug 28, 2019 |
| Last update date |
Jan 10, 2020 |
| Contact name |
Ivan Moskowitz |
| E-mail(s) |
imoskowitz@peds.bsd.uchicago.edu
|
| Organization name |
University of Chicago
|
| Department |
Pediatrics, Pathology, and Human Genetics
|
| Street address |
900 E 57th St
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (11)
|
| GSM4051624 |
IMJCWT1: Wild-type replicate 1 ncRNA-seq |
| GSM4051625 |
IMJCWT2: Wild-type replicate 2 ncRNA-seq |
| GSM4051626 |
IMJCWT3: Wild-type replicate 3 ncRNA-seq |
|
| This SubSeries is part of SuperSeries: |
| GSE136565 |
Enhancer transcription identifies cis-regulatory elements for photoreceptor cell types |
|
| Relations |
| BioProject |
PRJNA562697 |
| SRA |
SRP219509 |
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