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Status |
Public on May 16, 2019 |
Title |
Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome |
Organism |
Streptomyces clavuligerus |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
We obtained the high-quality genome sequence of S. clavuligerus ATCC 27064, and determined genome-wide TSSs. Then, RNA-Seq and ribosome profiling were additionally exploited to reveal fundamental regulatory elements for transcription and translation.
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Overall design |
Transcriptome (RNA-seq), translatome (ribosome profiling), primary transcriptome (dRNA-seq, pooled) data of Streptomyces clavuligerus ATCC 27064 at four different growth phases in duplicates using Illumina HiSeq
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Contributor(s) |
Hwang S, Lee N, Jeong Y, Lee Y, Kim W, Cho S, Palsson BO, Cho B |
Citation(s) |
31131406, 32385251, 33947798 |
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Submission date |
Mar 13, 2019 |
Last update date |
Aug 11, 2021 |
Contact name |
Soonkyu Hwang |
E-mail(s) |
geager@kaist.ac.kr
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Organization name |
KAIST
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Department |
Biological Sciences
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Street address |
291 Daehakro, Yuseong-gu
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City |
Daejeon |
ZIP/Postal code |
34141 |
Country |
South Korea |
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Platforms (1) |
GPL26293 |
Illumina HiSeq 2000 (Streptomyces clavuligerus ATCC 27064) |
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Samples (20)
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Relations |
BioProject |
PRJNA526821 |
SRA |
SRP188290 |