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Series GSE128216 Query DataSets for GSE128216
Status Public on May 16, 2019
Title Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome
Organism Streptomyces clavuligerus
Experiment type Expression profiling by high throughput sequencing
Summary We obtained the high-quality genome sequence of S. clavuligerus ATCC 27064, and determined genome-wide TSSs. Then, RNA-Seq and ribosome profiling were additionally exploited to reveal fundamental regulatory elements for transcription and translation.
Overall design Transcriptome (RNA-seq), translatome (ribosome profiling), primary transcriptome (dRNA-seq, pooled) data of Streptomyces clavuligerus ATCC 27064 at four different growth phases in duplicates using Illumina HiSeq
Contributor(s) Hwang S, Lee N, Jeong Y, Lee Y, Kim W, Cho S, Palsson BO, Cho B
Citation(s) 31131406, 32385251, 33947798
Submission date Mar 13, 2019
Last update date Aug 11, 2021
Contact name Soonkyu Hwang
Organization name KAIST
Department Biological Sciences
Street address 291 Daehakro, Yuseong-gu
City Daejeon
ZIP/Postal code 34141
Country South Korea
Platforms (1)
GPL26293 Illumina HiSeq 2000 (Streptomyces clavuligerus ATCC 27064)
Samples (20)
GSM3667330 Scla_RNA_E1
GSM3667331 Scla_RNA_E2
GSM3667332 Scla_RNA_T1
BioProject PRJNA526821
SRA SRP188290

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128216_Scla_RNA_ETLS_readcount.txt.gz 274.3 Kb (ftp)(http) TXT
GSE128216_Scla_RNA_gene_expression.txt.gz 850.9 Kb (ftp)(http) TXT
GSE128216_Scla_Ribo_ETLS_readcount.txt.gz 269.9 Kb (ftp)(http) TXT
GSE128216_Scla_Ribo_gene_expression.txt.gz 854.9 Kb (ftp)(http) TXT
GSE128216_Scla_TSS.gff.gz 49.3 Kb (ftp)(http) GFF
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Processed data are available on Series record

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