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Series GSE11262 Query DataSets for GSE11262
Status Public on Apr 25, 2008
Title Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary We collected globular stage seed compartments from 5 or 7-micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments of an Arabidopsis seed containing a globular stage embryo. For the purposes of this study we broke down the seed into 8 capturable compartments: embyro proper, suspensor, micropylar endosperm, peripheral endosperm, chalazal endosperm, chalazal seed coat, general seed coat, and whole seeds.
Keywords: cell type comparison
 
Overall design Globular stage seed compartments were isolated using the LMD6000 system. Total RNA was amplified and hybridized with Affymetrix ATH1 Arabidopsis array for 17 samples (Embryo Proper, Micropylar Endosperm, Peripheral Endosperm, General Seed Coat, Chalazal Seed Coat, and Whole Seeds, 2 biological replicates each and Chalazal Endosperm with 3 biological replicates).
 
Contributor(s) Stone SL, Pelletier J, Kirkbride RC, Lu XH, Belmonte MF, Fei J, Bui AQ, Goldberg RB, Harada JJ
Citation(s) 23319655, 20385809
Submission date Apr 25, 2008
Last update date Aug 28, 2018
Contact name John J Harada
E-mail(s) jjharada@ucdavis.edu
Phone 530-752-0673
Organization name University of California, Davis
Department Plant Biology
Lab Harada
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (17)
GSM284384 Arabidopsis GEP5
GSM284385 Arabidopsis GEP6
GSM284386 Arabidopsis GSUS3
This SubSeries is part of SuperSeries:
GSE12404 Expression data from Arabidopsis Seed Compartments at 5 discrete stages of development
Relations
BioProject PRJNA113823

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11262_RAW.tar 31.8 Mb (http)(custom) TAR (of CEL, CHP)
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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