|
| Status |
Public on Apr 02, 2020 |
| Title |
Role of Fragaria FaPRE1 in the plant development [FaPRE1-overexpression] |
| Organism |
Fragaria x ananassa |
| Experiment type |
Expression profiling by array
|
| Summary |
The role played by transcription factors in the regulation of strawberry fruit ripening process is scant. We have identified and functionally characterized FaPRE1, a non-DNA-binding bHLH transcription factor.
FaPRE1 is a ripening-related transcription factor that regulates genes involved in cell architecture in strawberry fruit receptacles.
|
| |
|
| Overall design |
A custom-made oligo microarray (60-mer length) platform (FraGenomics 35k) containing a total of 35234 singletons corresponding to those sequences published in the strawberry genome project (http://www.strawberry.org). For each sequence, 4 different oligos were printed per block and four blocks were printed per data set. We have analyzed three control samples, a three samples of transgenic floral buds overexpressing FaPRE1.
Please note that experiments were carried out technically as dual channel (eg, Cy3 and Cy5-labeled samples hybridized to the same array) but processed the results as though they are single channel (Cy3 and Cy5 signals are calculated; Cy3/Cy5 ratios are not calculated). Therefore 3 raw data files for total 6 samples are linked as Series supplementary files and the associated raw data file is indicated in the corresponding sample description field.
|
| |
|
| Contributor(s) |
Muñoz-Blanco J, Medina-Puche L, Molina-Hidalgo FJ |
| Citation(s) |
31881835 |
| Submission date |
Nov 06, 2017 |
| Last update date |
Jul 06, 2020 |
| Contact name |
Francisco Javier Molina-Hidalgo |
| Organization name |
University of Cordoba
|
| Department |
Biochemistry and molecular biology
|
| Street address |
Edif. Severo Ochoa (C6.) Planta Baja-Ala Norte Campus de Rabanales
|
| City |
CÓRDOBA |
| State/province |
Cordoba |
| ZIP/Postal code |
14071 |
| Country |
Spain |
| |
|
| Platforms (1) |
| GPL24234 |
037907-Agilent Fragaria x ananassa FraGenomics 35k [Feature number version] |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA417288 |
Less...
More...