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Platform GPL22542 Query DataSets for GPL22542
Status Public on Jan 01, 2017
Title Klug lab - Rhodobacter sphaeroides - 15k array Version 2 (144 sRNA)
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Cereibacter sphaeroides 2.4.1
Manufacturer Agilent technologies
Manufacture protocol The microarray contains probes against 4,304 protein-coding genes, 79 rRNA and tRNA genes, and 144 intergenic regions. Three antisense probes with a length of 60 nt were designed for each gene or intergenic region, when possible. Microarray construction was performed following the instructions of Agilent (www.chem.agilent.com).
 
 
Submission date Oct 11, 2016
Last update date Jan 01, 2017
Contact name Gabriele Klug
E-mail(s) Gabriele.Klug@mikro.bio.uni-giessen.de
Organization name Justus-Liebig University Gießen
Department Molecular- and Microbiology
Street address Heinrich-Buff-Ring 26-32
City Gießen
ZIP/Postal code 35392
Country Germany
 
Samples (4) GSM2340354, GSM2340355, GSM2340356, GSM2340357
Series (1)
GSE87789 R. sphaeroides pBBBRUpsMx2 vs. R. sphaeroides pBBR under singlet oxygen stress

Data table header descriptions
ID
Probe Identifier
IMG Systematic
ORF ORF Name
Description
SEQUENCE

Data table
ID Probe Identifier IMG Systematic ORF Description SEQUENCE
1 CUST_1_PI417174124 640069300 RSP_4039 Protein of unknown function DUF583 CCTCGATGGCGATGCGCTCGTGCAGGACATGGGCCTGAACGACGG
2 CUST_1_PI417174124 640069300 RSP_4039 Protein of unknown function DUF583 CCTCGATGGCGATGCGCTCGTGCAGGACATGGGCCTGAACGACGG
3 CUST_1_PI422709424 3'RSP6008 GCCCCTCCGCCGAGCGGAGGGGCGAGGTTTATGACTGCCCGGGTTTCGTTCGCCTTGTCT
4 CUST_10_PI417174124 640069303 RSP_7366 ABC sugar transporter, inner membrane subunit CTTGCGTGGTGATGTAGATGATGTCGAAGAAGCGCAGCAGATCGACCGAG
5 CUST_10_PI417174124 640069303 RSP_7366 ABC sugar transporter, inner membrane subunit CTTGCGTGGTGATGTAGATGATGTCGAAGAAGCGCAGCAGATCGACCGAG
6 CUST_10_PI422709424 3'RSP6250 CGGCCAGTCACACACGGAGATTCCGATTGACGCAATGCTAAAACATCAACCGTGCTTTAT
7 CUST_100_PI417174124 640069333 RSP_4004 Short-chain dehydrogenase/reductase SDR( EC:1.1.1.100 ) CATCGCTTCCACGAAGGCCTCGTTCAGCTCCGTCTCGATCCAGCC
8 CUST_100_PI417174124 640069333 RSP_4004 Short-chain dehydrogenase/reductase SDR( EC:1.1.1.100 ) CATCGCTTCCACGAAGGCCTCGTTCAGCTCCGTCTCGATCCAGCC
9 CUST_1000_PI417174124 640069620 RSP_1472 hypothetical protein CTGAATTCCATGTCGTTGATGAAGACCGACCGGCTCTCGCGGCTGATCATCAG
10 CUST_1000_PI417174124 640069620 RSP_1472 hypothetical protein CTGAATTCCATGTCGTTGATGAAGACCGACCGGCTCTCGCGGCTGATCATCAG
11 CUST_10000_PI417174124 640709980 RSP_4305 ( tRNA ) GAATCGAACCCTCGTCGTAAGCTTGGGAAGCTTCTGCTCTACCATTGAGCTAC
12 CUST_10001_PI417174124 640709981 RSP_4327 ( tRNA ) GATTCGAACCAACGAATGGCGGTACCAAAAACCGCTGCCTTACCACTTG
13 CUST_10002_PI417174124 640709982 RSP_4346 ( tRNA ) CTGGATTCGAACCAACGAATGGCGGTACCAAAAACCGCTGCCTTACC
14 CUST_10003_PI417174124 640709983 RSP_4328 ( tRNA ) CGATAACGGATTTGAACCGCTGACATCTTCGATGTGAACGAAGCGCTCTACC
15 CUST_10004_PI417174124 640709984 RSP_4326 ( tRNA ) GTCGGACTCGAACCGACACTCCGTGAGGAAAGGGTGTTTGAGACC
16 CUST_10005_PI417174124 640709985 RSP_4317 ( tRNA ) GACCCCCGGCGTGACAGGCCGGTACTCTAACCAACTGAGCTACAAC
17 CUST_10006_PI417174124 640709986 RSP_4316 ( tRNA ) GACCCCCGGCGTGACAGGCCGGTACTCTAACCGACTGAGCTACAAC
18 CUST_10007_PI417174124 640709987 RSP_4304 ( tRNA ) GATTTGAACGAACGACCTTCGCTTTACAAGAGCGCTGCACTACCACTGTGCTAAC
19 CUST_10008_PI417174124 640709989 RSP_4323 ( tRNA ) TACCGGAATCGAACCGGTCTTCACGGATTTGCAATCCGGTTAATTCCATTGAAAATAAAG
20 CUST_10009_PI417174124 640709990 RSP_4322 ( tRNA ) GAATCGAACCGGTCTTCACGGATTTGCAATCCGCTGCGTAACCTCTC

Total number of rows: 15208

Table truncated, full table size 1931 Kbytes.




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