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Status
Public on Dec 11, 2004
Title
Chicken_Neuroendocrine_System_5K
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Gallus gallus
Description
Spotted amplified cDNA array on glass. Produced with cDNA clones expressed in the chicken neuroendocrine system. Tissues used to produced the cDNA library included the hypothalamus, anterior pituitary gland, and pineal gland.
Web link
http://www.ansc.umd.edu/faculty/tpresearch.htm Contributor(s)
Porter TE , Ellestad LE , Muchow M , Jenkins SA , Carre W , Cogburn LA Citation(s)
16493019 , 16554550 Submission date
Dec 10, 2004
Last update date
Mar 24, 2006
Contact name
Tom Eric Porter
E-mail(s)
teporter@umd.edu Phone
301-405-2516
Fax
301-405-7980
URL
http://www.ansc.umd.edu/faculty/tpresearch.htm Organization name
University of Maryland
Department
Animal and Avian Sciences
Street address
Building #142
City
College Park
State/province
MD
ZIP/Postal code
20742
Country
USA
Samples (22)
GSM72701 , GSM72702 , GSM72703 , GSM72704 , GSM72705 , GSM72706
GSM72707 ,
GSM72708 ,
GSM72709 ,
GSM72710 ,
GSM72711 ,
GSM72712 ,
GSM72713 ,
GSM72714 ,
GSM72715 ,
GSM72716 ,
GSM72717 ,
GSM72718 ,
GSM72719 ,
GSM72720 ,
GSM72721 ,
GSM72722 Series (2)
GSE3226 Changes in pituitary gene expression between embryonic day 17 and post-hatch day 3.
GSE3227 Global gene expression profiling during pituitary thyrotroph, somatotroph, and lactotroph differentiation.
Data table header descriptions ID CLONE_NAME GB_ACC GenBank accession number of sequence
SPOT_ID BLAST_X First BlastX result
BLAST_N First BlastN result
CAP3_ASSEMBLY Result of CAP3 Assembly
CLONE_LINK LOCALISATION Localisation of the gene on Chicken Assembly
DNA concentration Overall Array Row Overall Array Column SubarrRow SubarrCol Row Column
Data table ID CLONE_NAME GB_ACC SPOT_ID BLAST_X BLAST_N CAP3_ASSEMBLY CLONE_LINK LOCALISATION DNA concentration Overall Array Row Overall Array Column SubarrRow SubarrCol Row Column 1
pgp1c.pk001.i17
BI390360 putative FK506-binding protein [Gallus gallus]
Gallus gallus mRNA for putative FK506-binding protein (FKBP25 gene)
Contig_13835.1 pgp1c/pgp1c.pk001.i17 chr5:55459886-55464886 60.8
1
1
1
1
1
1
2
pgp1c.pk002.a15
BI389781 No Hits Found
No Hits Found
pgp1c/pgp1c.pk002.a15 chr19:197813-202813 0.1
1
2
1
1
1
2
3
pgp1c.pk002.f23
BI389872 No Hits Found
Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete sequence
Contig_16671.1 pgp1c/pgp1c.pk002.f23 chr24:4336858-4341858 98.7
1
3
1
1
1
3
4
pgp1c.pk002.l20
BI390388 Tnf receptor-associated factor 2 [Mus musculus]
Homo sapiens TNF receptor-associated factor 2 (TRAF2), transcript variant 2, mRNA
pgp1c/pgp1c.pk002.l20 chr17:10311815-10316815 14.4
1
4
1
1
1
4
5
pgp1c.pk003.c11
BI390394 H2A histone family, member Z; H2AZ histone [Homo sapiens]
Bovine mRNA for histone H2A.Z
Contig_11784.2 pgp1c/pgp1c.pk003.c11 chrUn:145716420-145721420 19.1
1
5
1
1
1
5
6
pgp1c.pk003.h18
BI390179 unnamed protein product [Mus musculus]
No Hits Found
Contig_581.1 pgp1c/pgp1c.pk003.h18 chr3:5840848-5845848 27.3
1
6
1
1
1
6
7
pgp1c.pk001.i7
BI390361 zinc-finger helicase [Homo sapiens]
Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), mRNA
Contig_12844.1 pgp1c/pgp1c.pk001.i7 chr21:570529-575529 107.5
1
7
1
1
1
7
8
pgp1c.pk002.a18
BI389784 hypothetical protein MGC10963 [Homo sapiens]
Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region, complete sequence
Contig_1402.2 pgp1c/pgp1c.pk002.a18 chrUn:40415515-40420515 8.5
1
8
1
1
1
8
9
pgp1c.pk002.f3
BI389874 No Hits Found
No Hits Found
pgp1c/pgp1c.pk002.f3 61.5
1
9
1
1
1
9
10
pgp1c.pk002.l22
BI389975 No Hits Found
Homo sapiens clone 23969 mRNA sequence
Contig_13197.1 pgp1c/pgp1c.pk002.l22 chr1:49812094-49817094 147.9
1
10
1
1
1
10
11
pgp1c.pk003.c14
BI390395 reticulocalbin 2 [Rattus norvegicus]
Homo sapiens reticulocalbin 2, EF-hand calcium binding domain(RCN2), mRNA
Contig_4776.1 pgp1c/pgp1c.pk003.c14 chr10:3993128-3998128 24.2
1
11
1
1
1
11
12
pgp1c.pk003.h23
BI390185 S-adenosylhomocysteine hydrolase-like 1; S-adenosyl homocysteinehydrolase homolog [Homo sapiens]
Homo sapiens S-adenosylhomocysteine hydrolase-like 1 (AHCYL1), mRNA
Contig_11827.3 pgp1c/pgp1c.pk003.h23 chr26:4915-9915 25.2
1
12
1
1
1
12
13
pgp1c.pk001.j14
BI389685 KIAA1068 protein [Homo sapiens]
Homo sapiens, Similar to KIAA1068 protein, clone MGC:14963 IMAGE:4300217, mRNA, complete cds
Contig_4440.1 pgp1c/pgp1c.pk001.j14 chrUn:149829188-149834188 162.4
1
13
1
1
1
13
14
pgp1c.pk002.a20
BI389786 No Hits Found
No Hits Found
Contig_23259.1 pgp1c/pgp1c.pk002.a20 chr1:164961895-164966895 34.9
1
14
1
1
1
14
15
pgp1c.pk002.f7
BI389876 No Hits Found
Homo sapiens 3 BAC RP11-305O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence
Contig_1352.2 pgp1c/pgp1c.pk002.f7 chr4:60295673-60300673 42.9
1
15
1
1
1
15
16
pgp1c.pk001.j21
BI390429 DIHYDROPYRIMIDINASE RELATED PROTEIN-2 (DRP-2) (COLLAPSIN RESPONSE MEDIATOR PROTEIN CRMP-62)
Gallus gallus collapsin response mediator protein CRMP-62 mRNA, complete cds
Contig_13062.1 pgp1c/pgp1c.pk001.j21 chr22:484701-489701 102.7
1
16
1
2
1
1
17
pgp1c.pk002.a24
BI389790 hypothetical protein [Homo sapiens]
Homo sapiens, Similar to hypothetical gene supported by AL050367; AK022946, clone MGC:34829 IMAGE:52
pgp1c/pgp1c.pk002.a24 4.8
1
17
1
2
1
2
18
pgp1c.pk002.g18
BI389884 No Hits Found
No Hits Found
Contig_2477.2 pgp1c/pgp1c.pk002.g18 chr4:69486522-69491522 75
1
18
1
2
1
3
19
pgp1c.pk002.m23
CD218760 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3,yeast)-like 1 [Homo sapiens]
Homo sapiens elongation of very long chain fatty acids (FEN1/Elo2,SUR4/Elo3, yeast)-like 1 (ELOVL1),
Contig_11907.6 pgp1c/pgp1c.pk002.m23 chr8:19981028-19986028 24.7
1
19
1
2
1
4
20
pgp1c.pk003.c4
BI390094 No Hits Found
No Hits Found
Contig_7042.1 pgp1c/pgp1c.pk003.c4 chr7:28894362-28899362 2.2
1
20
1
2
1
5
7200 1235 Kbytes .Supplementary data files not provided
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