GEO help: Mouse over screen elements for information.
Status
Public on Feb 01, 2012
Title
Derived from GPL7088 - CCDTM Hs_CCDTM36k
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
NIH Clinical Center, Dept. of Transfusion Medicine, Immunogenetics Section (NIH/CC/DTM)
Manufacture protocol
Microarrays are printed with GeneMachines robotic arrayer from Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead containing 48 SMP3 printing pins from Telechem International (http://www.arrayit.com ). The human oligo probe set is purchased from Operon Human Genome Array-Ready Oligo Set[tm] (AROS) Version 4.0 which contains 35,035 oligonucleotide probes, representing approximately 25,100 unique genes and 39,600 transcripts excluding control oligos. The human version 4.0 is constructed based on the Ensembl human database build (NCBI-35c), with a full coverage on NCBI human Refseq dataset (04/04/2005). In addition, it integrates a significant portion of unique full-length cDNA clone sequences from H-Invitational Database (release 1.8). The microarray spot densities are 157.5 microns (center-to-center), and one spot is printed per probe per slide. The microarrays are printed on Epoxy coated slide (ThermoFisher) and post processed according to manufacture instruction.
Support
glass
Coating
epoxy
Submission date
Feb 24, 2011
Last update date
Jan 17, 2013
Contact name
Francesco Maria Marincola
E-mail(s)
fmarincola@sidra.org Phone
301-793-8210
Organization name
Sidra Medical and Research Center
Street address
Al Nasr Tower, AL Corniche Street, PO Box 26999
City
Doha
ZIP/Postal code
PO Box 26999
Country
Qatar
Samples (140)
GSM679752 , GSM679753 , GSM679754 , GSM679755 , GSM679756 , GSM679757
GSM679758 ,
GSM679759 ,
GSM679760 ,
GSM703445 ,
GSM703446 ,
GSM703447 ,
GSM703449 ,
GSM703450 ,
GSM703451 ,
GSM703452 ,
GSM703453 ,
GSM703454 ,
GSM703455 ,
GSM703456 ,
GSM703457 ,
GSM703458 ,
GSM703459 ,
GSM703460 ,
GSM703461 ,
GSM703462 ,
GSM703463 ,
GSM703464 ,
GSM703465 ,
GSM703466 ,
GSM703467 ,
GSM703468 ,
GSM703469 ,
GSM703470 ,
GSM703471 ,
GSM703472 ,
GSM703473 ,
GSM703474 ,
GSM703475 ,
GSM703476 ,
GSM703477 ,
GSM703478 ,
GSM703479 ,
GSM703480 ,
GSM703481 ,
GSM703482 ,
GSM703483 ,
GSM703484 ,
GSM703485 ,
GSM703486 ,
GSM703487 ,
GSM703488 ,
GSM703489 ,
GSM703490 ,
GSM703491 ,
GSM703492 ,
GSM703493 ,
GSM703494 ,
GSM703495 ,
GSM703496 ,
GSM703497 ,
GSM703498 ,
GSM703499 ,
GSM703500 ,
GSM703501 ,
GSM703502 ,
GSM703503 ,
GSM703504 ,
GSM703505 ,
GSM703506 ,
GSM703507 ,
GSM703508 ,
GSM703509 ,
GSM703510 ,
GSM703511 ,
GSM703513 ,
GSM808427 ,
GSM808428 ,
GSM808429 ,
GSM808430 ,
GSM808431 ,
GSM808432 ,
GSM808433 ,
GSM808434 ,
GSM808435 ,
GSM808436 ,
GSM808437 ,
GSM808438 ,
GSM808439 ,
GSM808440 ,
GSM808441 ,
GSM808442 ,
GSM808443 ,
GSM808444 ,
GSM808445 ,
GSM808446 ,
GSM808447 ,
GSM808448 ,
GSM808449 ,
GSM808450 ,
GSM808451 ,
GSM808452 ,
GSM808453 ,
GSM808454 ,
GSM808455 ,
GSM808456 ,
GSM808457 ,
GSM808458 ,
GSM808459 ,
GSM808460 ,
GSM808461 ,
GSM808462 ,
GSM808463 ,
GSM808464 ,
GSM808465 ,
GSM808466 ,
GSM808467 ,
GSM808468 ,
GSM808469 ,
GSM808470 ,
GSM808471 ,
GSM808472 ,
GSM808473 ,
GSM808474 ,
GSM808475 ,
GSM808476 ,
GSM808477 ,
GSM808478 ,
GSM808479 ,
GSM808480 ,
GSM808481 ,
GSM808482 ,
GSM808483 ,
GSM808484 ,
GSM808485 ,
GSM808486 ,
GSM808487 ,
GSM808488 ,
GSM808489 ,
GSM808490 Series (3)
GSE27519 The NEMO (NF-KB Essential Modulator) Binding Domain (NBD) peptide induces apoptosis in several melan
GSE28472 Permissivity of the NCI-60 cancer cell lines to oncolytic Vaccinia Virus GLV-1h68
GSE32611 Molecular insights on the peripheral and intra-tumoral effects of systemic high dose rIL-2 (Aldesleukin) administration for the treatment of metastatic melanoma
Data table header descriptions ID NIH mAdb well id plus replicate number
MADB_WELL_ID NIH mAdb plate-well identifier for oligo sample
OLIGO_ID Oligo identifier
ORF Gene Name Gene Name
UNIGENE UniGene Identifier Build #Hs.229
DESCRIPTION Gene Description
GB_ACC GENBANK ID assigned by vendor
GB_ACC RefSeq ID assigned by mAdb
SEQUENCE Sequence of the oligo sample
SPOT_ID
Data table ID MADB_WELL_ID OLIGO_ID ORF UNIGENE DESCRIPTION GB_ACC GB_ACC SEQUENCE SPOT_ID 6590735_1
6590735
H200000163
NDUFB7 532853
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa (NDUFB7), nuclear gene encoding mitochondrial protein, mRNA.
NM_004146 NM_004146 ATGTGATGCGCATGAAGGAGTTTGAGCGGGAGCGGAGGCTGCTCCAGCGGAAGAAGCGGCGGGAGAAGA
6590747_1
6590747
H200000170
CSTF2 132370
cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa (CSTF2), mRNA.
NM_001325 NM_001325 GGGGAGGCACTTTACTTTCTGTAACTGGAGAGGTAGAGCCTAGAGGTTACTTGGGACCACCTCATCAGG
6590831_1
6590831
H200000203
CXCL1 789
chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (CXCL1), mRNA.
NM_001511 NM_001511 TCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACATGCCAGCCACTGTGATAGAG
6590843_1
6590843
H200000214
HOXB7 436181
homeobox B7 (HOXB7), mRNA.
NM_004502 NM_004502 CTTGCAGTTTTGTAAGCCCTCTTTAATGCTGTCTTTGTGGACTGTGGGTCTGGACTAACCCTGTGGTTG
6590927_1
6590927
H200000250
GCNT2 519884
glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) (GCNT2), transcript variant 2, mRNA.
NM_001491 NM_001491 GGCTCTGCCTATGTGGCTCTATCAAGAGAGTTTGCCAACTTTGTTCTGCATGACCCACGGGCTGTTGAT
6590939_1
6590939
H200000259
PDHB 161357
pyruvate dehydrogenase (lipoamide) beta (PDHB), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA.
NM_000925 NM_001173468 CCAGGATCATGGAAGGTCCTGCGTTCAATTTCCTGGATGCTCCTGCTGTTCGTGTCACTGGTGCTGATG
6591023_1
6591023
H200000289
LTBR 1116
lymphotoxin beta receptor (TNFR superfamily, member 3) (LTBR), mRNA.
NM_002342 NM_002342 ACGGTACCAATGGCATTCATGTCACCGGCGGGTCTATGACTATCACTGGCAACATCTACATCTACAATG
6591035_1
6591035
H200000300
THPO 1166
thrombopoietin (THPO), transcript variant 3, mRNA.
NM_000460 NM_001177598 AAACACATCCTACACCCACTCCCAGAATCTGTCTCAGGAAGGGTAAGGTTCTCAGACACTGCCGACATC
6591119_1
6591119
H200000788
MAP2K1 145442
mitogen-activated protein kinase kinase 1 (MAP2K1), mRNA.
NM_002755 NM_002755 TAAGTGTTTGGGAAGCAACAAAGAGCGAGTCCCCTGCCCGGTGGTTTGCCATGTCGCTTTTGGGCCTCC
6591131_1
6591131
H200000796
SRSF10 3530
serine/arginine-rich splicing factor 10 (SRSF10), transcript variant 3, mRNA.
NM_054016 NM_001191005 GCTTTTCACACCTCAGTTTATTTAATACGAGGCAAGTTGTAAGACAACACTCATTCTAGGTGATTCTGT
6591215_1
6591215
H200000825
COPS7A 530823
COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) (COPS7A), transcript variant 4, mRNA.
NM_016319 NM_016319 AGCATCTGTCCCTGTTCATTACATGTCATTGAGTAGGTGGGTAGCCCTGATGGGGGTCGCTCTGTCTGG
6591227_1
6591227
H200000838
STMN4 201058
stathmin-like 4 (STMN4), mRNA.
NM_030795 NM_030795 ACATGTTAAGAATTGACCAGTGAAGCCATCCTATTTGTTTCCGGGGAACAATGACGGGGTGGGAGAGGG
6591311_1
6591311
H200000870
MED13L 603766
mediator complex subunit 13-like (MED13L), mRNA.
AL133033 NM_015335 ACCATGGTTTGAACAAAAAAAGGGGAAATGGGGAGGGGAAAAGGGTGGGATTGTCCAGCATGCTTGTAT
6591323_1
6591323
H200000879
REG1B 4158
regenerating islet-derived 1 beta (REG1B), mRNA.
NM_006507 NM_006507 AAATTAAACTAGACTATGTCTCCAACTCAGTTCAGACCATCTCCTCCCTAATGAGTTTGCATCGCTGAT
6591407_1
6591407
H200000913
PSMC1 356654
proteasome (prosome, macropain) 26S subunit, ATPase, 1 (PSMC1), mRNA.
BC013908 NM_002802 ATGTTCTTTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAATGAACCATGGCTGTCATCA
6591419_1
6591419
H200000919
FEN1 409065
flap structure-specific endonuclease 1 (FEN1), mRNA.
NM_004111 NM_004111 CCTTAAGAGCTACAGCTAGAGAAACCTTCACGGGGTGGAGAGAGGATTCTAAGGCTTTTCTAGCGTGAC
6591503_1
6591503
H200001462
C12orf29 591009
chromosome 12 open reading frame 29 (C12orf29), mRNA.
AL137488 NM_001009894 AGTGATGGCTGTTTAATAAAGGTCCATCGCCATCATCTTGGCTTATGCTGGCCAATTCCAGATACTTAC
6591515_1
6591515
H200001474
GABARAP 647421
GABA(A) receptor-associated protein (GABARAP), mRNA.
NM_007278 NM_007278 AGGCTCCCAAAGCTCGGATAGGAGACCTGGACAAAAAGAAATACCTGGTGCCTTCTGATCTCACAGTTG
6591599_1
6591599
H200001516
PELI1 7886
pellino homolog 1 (Drosophila) (PELI1), mRNA.
NM_020651 NM_020651 GGGTTGAATGACAATAGTGCCCCCGTTTTTAGCAGACCAGCCTTAACTCTGGGTTTGAATCCTAAGGAG
6591611_1
6591611
H200001529
SCAMP5 374180
secretory carrier membrane protein 5 (SCAMP5), transcript variant 3, mRNA.
AK056438 NM_138967 CAAAAATCCAAACCCCACTTGGCTACTCTGGCCTGGCTTCAGCTTGGAACCCAATACCTAGGCTTACAG
35851 6418 Kbytes .Supplementary data files not provided
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