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    FAM85A family with sequence similarity 85 member A [ Homo sapiens (human) ]

    Gene ID: 619423, updated on 17-Sep-2024

    Summary

    Official Symbol
    FAM85Aprovided by HGNC
    Official Full Name
    family with sequence similarity 85 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:17606
    See related
    AllianceGenome:HGNC:17606
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in ovary (RPKM 5.9), thyroid (RPKM 5.2) and 24 other tissues See more
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    Genomic context

    Location:
    8p23.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12185736..12202526)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (7532074..7548832, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (12043245..12060035)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12037424-12037936 Neighboring gene family with sequence similarity 90 member A2, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12037937-12038447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12038587-12039088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12039089-12039588 Neighboring gene ALG1 like 11, pseudogene Neighboring gene family with sequence similarity 86 member B1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:12052743-12053312 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:12070506-12071007 Neighboring gene defensin beta 131D (pseudogene)

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146925.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC145124

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      12185736..12202526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654717.1 Reference GRCh38.p14 PATCHES

      Range
      1140409..1150343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002959166.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      7532074..7548832 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)