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    fam91a1 family with sequence similarity 91 member A1 [ Danio rerio (zebrafish) ]

    Gene ID: 393413, updated on 15-Sep-2024

    Summary

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    Official Symbol
    fam91a1provided by ZNC
    Official Full Name
    family with sequence similarity 91 member A1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1187
    See related
    Ensembl:ENSDARG00000003320 AllianceGenome:ZFIN:ZDB-GENE-040426-1187
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:63609
    Summary
    Predicted to be involved in intracellular protein transport and vesicle tethering to Golgi. Predicted to be located in Golgi apparatus. Predicted to be active in cytoplasmic vesicle and trans-Golgi network. Orthologous to human FAM91A1 (family with sequence similarity 91 member A1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (33093360..33137720)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (33506230..33550600)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene spire-type actin nucleation factor 1a Neighboring gene kelch-like family member 38a Neighboring gene LRAT domain containing 2a Neighboring gene tribbles pseudokinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC63609

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular protein transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in vesicle tethering to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytoplasmic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in trans-Golgi network ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM91A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200441.1 → NP_956735.1  protein FAM91A1

      See identical proteins and their annotated locations for NP_956735.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054922
      UniProtKB/Swiss-Prot
      Q6TEP1, Q7SYC3
      Related
      ENSDARP00000008437.9, ENSDART00000019459.10
      Conserved Domains (2) summary
      pfam14647
      Location:10 → 312
      FAM91_N; FAM91 N-terminus
      pfam14648
      Location:371 → 811
      FAM91_C; FAM91 C-terminus

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      33093360..33137720
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468013.2 → XP_021323688.1  protein FAM91A1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PAU9
      Conserved Domains (2) summary
      pfam14647
      Location:10 → 312
      FAM91_N; FAM91 N-terminus
      pfam14648
      Location:371 → 804
      FAM91_C; FAM91 C-terminus

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395056.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      236853..281178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6TEP1.2 GenPept UniProtKB/Swiss-Prot:Q6TEP1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials