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    Rara retinoic acid receptor alpha [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100728220, updated on 3-Apr-2024

    Summary

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    Gene symbol
    Rara
    Gene description
    retinoic acid receptor alpha
    See related
    Ensembl:ENSCPOG00000007730
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Rara in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (92839682..92880626)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176366.1 (10773925..10805326)

    NW_026947489.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 6 Neighboring gene uncharacterized LOC134476553 Neighboring gene gap junction protein delta 3 Neighboring gene DNA topoisomerase II alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947489.1 Reference mCavPor4.1

      Range
      92839682..92880626
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003466940.5 → XP_003466988.1  retinoic acid receptor alpha isoform X1

      UniProtKB/TrEMBL
      A0A286XPR8
      Related
      ENSCPOP00000027518.1
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_063251506.1 → XP_063107576.1  retinoic acid receptor alpha isoform X3

    3. XM_063251504.1 → XP_063107574.1  retinoic acid receptor alpha isoform X1

      UniProtKB/TrEMBL
      A0A286XPR8

    4. XM_013149628.3 → XP_013005082.1  retinoic acid receptor alpha isoform X4

      Conserved Domains (2) summary
      cd06937
      Location:67 → 297
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cl02596
      Location:1 → 44
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

    5. XM_063251505.1 → XP_063107575.1  retinoic acid receptor alpha isoform X3

    6. XM_013149626.2 → XP_013005080.1  retinoic acid receptor alpha isoform X3

      Conserved Domains (2) summary
      cd06937
      Location:97 → 327
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cl02596
      Location:20 → 77
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

    7. XM_023563889.2 → XP_023419657.1  retinoic acid receptor alpha isoform X3

      Conserved Domains (2) summary
      cd06937
      Location:97 → 327
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cl02596
      Location:20 → 77
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

    8. XM_003466939.5 → XP_003466987.1  retinoic acid receptor alpha isoform X2

      UniProtKB/TrEMBL
      H0VAS1
      Related
      ENSCPOP00000006966.3
      Conserved Domains (2) summary
      cd06937
      Location:183 → 413
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:79 → 163
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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