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    zgc:162396 zgc:162396 [ Danio rerio (zebrafish) ]

    Gene ID: 555292, updated on 11-Apr-2024

    Summary

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    Official Symbol
    zgc:162396provided by ZNC
    Official Full Name
    zgc:162396provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1190
    See related
    Ensembl:ENSDARG00000069549 AllianceGenome:ZFIN:ZDB-GENE-030131-1190
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb62c07; wu:fb62c07; si:ch211-31o18.2
    Summary
    Predicted to enable methyltransferase activity. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (28688918..28691972)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (28878172..28881226)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884718 Neighboring gene uncharacterized LOC100537744 Neighboring gene zgc:162780 Neighboring gene uncharacterized LOC101884827

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC555292

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044782.2 → NP_001038247.2  uncharacterized protein LOC555292

      See identical proteins and their annotated locations for NP_001038247.2

      Status: PREDICTED

      Source sequence(s)
      BC133968
      UniProtKB/TrEMBL
      A3KNR4, F6NJ50, Q1LYQ0
      Related
      ENSDARP00000092093.3, ENSDART00000101319.5
      Conserved Domains (1) summary
      pfam08241
      Location:46 → 138
      Methyltransf_11; Methyltransferase domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      28688918..28691972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304743.1 → XP_009303018.1  uncharacterized protein LOC555292 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AW36
      Conserved Domains (1) summary
      pfam08241
      Location:22 → 67
      Methyltransf_11; Methyltransferase domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394757.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      182328..185361
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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