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    Pnldc1 PARN like ribonuclease domain containing exonuclease 1 [ Fukomys damarensis (Damara mole-rat) ]

    Gene ID: 104866845, updated on 12-Mar-2024

    Summary

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    Gene symbol
    Pnldc1
    Gene description
    PARN like ribonuclease domain containing exonuclease 1
    Locus tag
    H920_08194
    See related
    Ensembl:ENSFDAG00000021334
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fukomys damarensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
    Orthologs
    human mouse all
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    Genomic context

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    See Pnldc1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900926.1 (42934370..42977084, complement)
    101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045058.1 (1468680..1511393, complement)

    NW_022900926.1Genomic Context describing neighboring genes Neighboring gene MAS1 proto-oncogene, G protein-coupled receptor Neighboring gene mas-related G-protein coupled receptor member H Neighboring gene U6 spliceosomal RNA Neighboring gene mitochondrial ribosomal protein L18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(A)-specific ribonuclease PNLDC1
    Names
    PARN like, ribonuclease domain containing 1
    Poly(A)-specific ribonuclease PARN-like domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DMR_v1.0_HiC Primary Assembly

    Genomic

    1. NW_022900926.1 Reference DMR_v1.0_HiC Primary Assembly

      Range
      42934370..42977084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010631054.3 → XP_010629356.1  poly(A)-specific ribonuclease PNLDC1 isoform X1

      UniProtKB/TrEMBL
      A0A091DDZ7
      Conserved Domains (1) summary
      pfam04857
      Location:8 → 373
      CAF1; CAF1 family ribonuclease

    2. XM_010631057.3 → XP_010629359.1  poly(A)-specific ribonuclease PNLDC1 isoform X2

      Conserved Domains (1) summary
      pfam04857
      Location:8 → 373
      CAF1; CAF1 family ribonuclease

    RNA

    1. XR_781585.3 RNA Sequence

    2. XR_781584.3 RNA Sequence

    3. XR_004517141.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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