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    si:dkey-10o6.2 si:dkey-10o6.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100124608, updated on 25-Apr-2024

    Summary

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    Official Symbol
    si:dkey-10o6.2provided by ZNC
    Official Full Name
    si:dkey-10o6.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070705-284
    See related
    Ensembl:ENSDARG00000074628 AllianceGenome:ZFIN:ZDB-GENE-070705-284
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (38209721..38216268, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (38228713..38235718, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909173 Neighboring gene leucine zipper protein 2 Neighboring gene nucleobindin 2b Neighboring gene cell cycle associated protein 1b Neighboring gene N-acetyltransferase 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100124608

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102635.1 → NP_001096105.1  uncharacterized protein LOC100124608

      See identical proteins and their annotated locations for NP_001096105.1

      Status: PREDICTED

      Source sequence(s)
      BC150233
      UniProtKB/TrEMBL
      A7E280
      Conserved Domains (3) summary
      COG3491
      Location:1 → 311
      PcbC; Isopenicillin N synthase and related dioxygenases [Secondary metabolites biosynthesis, transport and catabolism]
      pfam03171
      Location:177 → 276
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      pfam14226
      Location:3 → 121
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      38209721..38216268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467563.1 → XP_021323238.1  uncharacterized protein LOC100124608 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P9V2
      Related
      ENSDARP00000115004.2, ENSDART00000144622.4
      Conserved Domains (1) summary
      COG3491
      Location:1 → 311
      PcbC; Isopenicillin N synthase and related dioxygenases [Secondary metabolites biosynthesis, transport and catabolism]
    Nucleotide Protein
    Heading Accession and Version

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