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    CHLNCDRAFT_57427 hypothetical protein [ Chlorella variabilis ]

    Gene ID: 17356707, updated on 28-Dec-2023

    Summary

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    Gene symbol
    CHLNCDRAFT_57427
    Gene description
    hypothetical protein
    Locus tag
    CHLNCDRAFT_57427
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Chlorella variabilis (strain: NC64A)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    22

    NW_005435082.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene expressed protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005435082.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Blanc G, et al. Plant Cell, 2010 Sep. PMID 20852019, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine pyrophosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of oxoglutarate dehydrogenase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    XP_005849381.1
    • similar to putative 2-oxoglutarate dehydrogenase, E1 subunit; expressed

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_005435082.1 Reference assembly

      Range
      1506099..1515133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005849319.1 → XP_005849381.1  hypothetical protein CHLNCDRAFT_57427 [Chlorella variabilis]

      See identical proteins and their annotated locations for XP_005849381.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E1ZAL3
      Conserved Domains (6) summary
      PRK09404
      Location:41 → 838
      sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
      pfam16078
      Location:43 → 80
      2-oxogl_dehyd_N; 2-oxoglutarate dehydrogenase N-terminus
      pfam16870
      Location:721 → 837
      OxoGdeHyase_C; 2-oxoglutarate dehydrogenase C-terminal
      cl00240
      Location:463 → 504
      RRF; Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of ...
      cl01629
      Location:248 → 461
      TPP_enzymes; Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and ...
      cl11410
      Location:570 → 714
      TPP_enzyme_PYR; Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes
    Nucleotide Protein
    Heading Accession and Version

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