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    LOC109541812 uncharacterized LOC109541812 [ Dendroctonus ponderosae (mountain pine beetle) ]

    Gene ID: 109541812, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC109541812
    Gene description
    uncharacterized LOC109541812
    Locus tag
    HUJ05_008969
    See related
    EnsemblRapid:LOC109541812
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dendroctonus ponderosae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC109541812 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Dpon_F_20191213v2 (GCF_020466585.1) Unplaced Scaffold NW_026019116.1 (4531859..4542647)
    100 previous assembly DendPond_male_1.0 (GCF_000355655.1) Unplaced Scaffold NW_017852245.1 (507244..518530)

    NW_026019116.1Genomic Context describing neighboring genes Neighboring gene longitudinals lacking protein Neighboring gene RB-associated KRAB zinc finger protein Neighboring gene uncharacterized LOC125505612 Neighboring gene nitric oxide synthase-interacting protein homolog Neighboring gene sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene malonyl-CoA-acyl carrier protein transacylase beg

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Quantitative metabolome, proteome and transcriptome analysis of midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderosae Hopkins, and insights into pheromone biosynthesis. Keeling CI, et al. Insect Biochem Mol Biol, 2016 Mar. PMID 26792242

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC109541812

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dendroctonus ponderosae Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Dpon_F_20191213v2

    Genomic

    1. NW_026019116.1 Reference Dpon_F_20191213v2

      Range
      4531859..4542647
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019910785.2 → XP_019766344.1  uncharacterized protein LOC109541812 isoform X1

      UniProtKB/TrEMBL
      N6T0G0
      Related
      XP_019766344.1
      Conserved Domains (1) summary
      pfam05225
      Location:310 → 355
      HTH_psq; helix-turn-helix, Psq domain

    2. XM_019910786.2 → XP_019766345.1  uncharacterized protein LOC109541812 isoform X2

      UniProtKB/TrEMBL
      N6T0G0
      Related
      XP_019766345.1
      Conserved Domains (1) summary
      pfam05225
      Location:310 → 355
      HTH_psq; helix-turn-helix, Psq domain
    Nucleotide Protein
    Heading Accession and Version

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