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    LOC18612130 serine/threonine-protein phosphatase 5 [ Theobroma cacao (cacao) ]

    Gene ID: 18612130, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18612130
    Gene description
    serine/threonine-protein phosphatase 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18612130 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 1 NC_030850.1 (9506819..9517142, complement)

    Chromosome 1 - NC_030850.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 Neighboring gene pentatricopeptide repeat-containing protein At4g17616 Neighboring gene uncharacterized LOC18612131 Neighboring gene U3 small nucleolar RNA-associated protein 18 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030850.1 Chromosome 1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030850.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      9506819..9517142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018113913.1 → XP_017969402.1  serine/threonine-protein phosphatase 5 isoform X1

      UniProtKB/TrEMBL
      A0A061DJS3

    2. XM_018113914.1 → XP_017969403.1  serine/threonine-protein phosphatase 5 isoform X2

      UniProtKB/TrEMBL
      A0A061DJZ6, A0A061DSK2
    Nucleotide Protein
    Heading Accession and Version

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