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    LOC18608142 NEDD8-conjugating enzyme Ubc12 [ Theobroma cacao (cacao) ]

    Gene ID: 18608142, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18608142
    Gene description
    NEDD8-conjugating enzyme Ubc12
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18608142 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 2 NC_030851.1 (6162470..6165540)

    Chromosome 2 - NC_030851.1Genomic Context describing neighboring genes Neighboring gene UPF0496 protein At4g34320 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 Neighboring gene deSI-like protein At4g17486

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030851.1 Chromosome 2 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NEDD8 transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein neddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NEDD8-conjugating enzyme Ubc12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030851.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      6162470..6165540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007042669.2 → XP_007042731.1  NEDD8-conjugating enzyme Ubc12

      See identical proteins and their annotated locations for XP_007042731.1

      UniProtKB/TrEMBL
      A0A061DFZ6, A0A061E1P9
      Conserved Domains (1) summary
      pfam00179
      Location:33 → 169
      UQ_con; Ubiquitin-conjugating enzyme

    2. XM_007042668.2 → XP_007042730.1  NEDD8-conjugating enzyme Ubc12

      See identical proteins and their annotated locations for XP_007042730.1

      UniProtKB/TrEMBL
      A0A061DFZ6, A0A061E1P9
      Conserved Domains (1) summary
      pfam00179
      Location:33 → 169
      UQ_con; Ubiquitin-conjugating enzyme

    3. XM_018114518.1 → XP_017970007.1  NEDD8-conjugating enzyme Ubc12

      UniProtKB/TrEMBL
      A0A061DFZ6, A0A061E1P9
      Conserved Domains (1) summary
      pfam00179
      Location:33 → 169
      UQ_con; Ubiquitin-conjugating enzyme
    Nucleotide Protein
    Heading Accession and Version

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