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    LOC100255279 myb family transcription factor IPN2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100255279, updated on 20-Nov-2023

    Summary

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    Gene symbol
    LOC100255279
    Gene description
    myb family transcription factor IPN2
    Locus tag
    VIT_00015900001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003677 GO:0005634 GO:0045449
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 3 NC_081807.1 (21041774..21043857)
    102 previous assembly 12X (GCF_000003745.3) 3 NC_012009.3 (19070395..19072479)

    Chromosome 3 - NC_081807.1Genomic Context describing neighboring genes Neighboring gene 36.4 kDa proline-rich protein Neighboring gene LRR receptor-like serine/threonine-protein kinase RGI5 Neighboring gene RCC1 domain-containing protein RUG3, mitochondrial Neighboring gene uncharacterized LOC100265576

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myb family transcription factor IPN2
    Names
    myb family transcription factor APL

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081807.1 Reference ASM3070453v1 Primary Assembly

      Range
      21041774..21043857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010649917.2 → XP_010648219.1  myb family transcription factor IPN2 isoform X1

      UniProtKB/TrEMBL
      D7TUH0
      Conserved Domains (2) summary
      TIGR01557
      Location:23 → 79
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:123 → 169
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. XM_010649918.3 → XP_010648220.1  myb family transcription factor IPN2 isoform X2

      UniProtKB/TrEMBL
      D7TUH0
      Conserved Domains (2) summary
      TIGR01557
      Location:23 → 79
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:121 → 166
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    3. XM_010649920.2 → XP_010648222.1  myb family transcription factor IPN2 isoform X3

      UniProtKB/TrEMBL
      D7TUH0
      Conserved Domains (2) summary
      TIGR01557
      Location:23 → 79
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:120 → 165
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version

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