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    Vmn2r12 vomeronasal 2, receptor 12 [ Mus musculus (house mouse) ]

    Gene ID: 627569, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Vmn2r12provided by MGI
    Official Full Name
    vomeronasal 2, receptor 12provided by MGI
    Primary source
    MGI:MGI:3761377
    See related
    Ensembl:ENSMUSG00000090688 AllianceGenome:MGI:3761377
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6769; EG627569
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    5 F; 5 53.24 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (109233715..109245730, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (109085849..109097864, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13914 Neighboring gene predicted gene 5871 Neighboring gene vomeronasal 2, receptor 11 Neighboring gene STARR-seq mESC enhancer starr_13915 Neighboring gene STARR-seq mESC enhancer starr_13916 Neighboring gene vomeronasal 2, receptor 13 Neighboring gene vomeronasal 2, receptor 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal 2, receptor 12
    Names
    vomeronasal receptor Vmn2r12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104623.1 → NP_001098093.1  vomeronasal 2, receptor 12 precursor 1 precursor

      Status: INFERRED

      Source sequence(s)
      AC133456
      Consensus CDS
      CCDS51598.1
      UniProtKB/TrEMBL
      L7N217
      Related
      ENSMUSP00000093612.4, ENSMUST00000095922.5
      Conserved Domains (3) summary
      cd06365
      Location:40 → 497
      PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam00003
      Location:593 → 827
      7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
      pfam07562
      Location:506 → 558
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    2. NM_001385229.1 → NP_001372158.1  vomeronasal 2, receptor 12 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC133456
      Conserved Domains (3) summary
      cd15283
      Location:578 → 829
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      pfam07562
      Location:505 → 558
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cl10011
      Location:45 → 497
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      109233715..109245730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321059.1 → XP_017176548.1  vomeronasal 2, receptor 12 isoform X1

      Conserved Domains (1) summary
      cl10011
      Location:45 → 429
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
    Nucleotide Protein
    Heading Accession and Version

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