U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC25498733 transcription factor DIVARICATA [ Medicago truncatula (barrel medic) ]

    Gene ID: 25498733, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC25498733
    Gene description
    transcription factor DIVARICATA
    Locus tag
    MtrunA17_Chr7g0241761
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (31330233..31333032)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (24520024..24522822)

    Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g09060 Neighboring gene uncharacterized LOC25498727 Neighboring gene protein NRT1/ PTR FAMILY 8.1 Neighboring gene putative UDP-rhamnose:rhamnosyltransferase 1 Neighboring gene putative UDP-rhamnose:rhamnosyltransferase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor DIVARICATA
    Names
    MYB transcription factor MYB51
    putative transcription factor MYB/SANT family

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      31330233..31333032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013593667.3 → XP_013449121.1  transcription factor DIVARICATA

      UniProtKB/TrEMBL
      A0A072U1U5, D5FFG7
      Conserved Domains (2) summary
      TIGR01557
      Location:137 → 189
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00167
      Location:34 → 80
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases