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    LOC107454480 short transient receptor potential channel 4-like [ Parasteatoda tepidariorum (common house spider) ]

    Gene ID: 107454480, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC107454480
    Gene description
    short transient receptor potential channel 4-like
    See related
    EnsemblRapid:LOC107454480
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parasteatoda tepidariorum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Theridiidae; Parasteatoda
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current Ptep_3.0 (GCF_000365465.3) Unplaced Scaffold NW_024969617.1 (804655..827056, complement)
    100 previous assembly Ptep_1.0 (GCF_000365465.1) Unplaced Scaffold NW_015486820.1 (389818..413219, complement)

    NW_024969617.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122269966 Neighboring gene synaptogenesis protein syg-2 Neighboring gene uncharacterized LOC107454483 Neighboring gene nephrin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Parasteatoda tepidariorum Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ptep_3.0

    Genomic

    1. NW_024969617.1 Reference Ptep_3.0

      Range
      804655..827056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016071687.2 → XP_015927173.1  short transient receptor potential channel 4-like

      Related
      XP_015927173.1, XM_016071687.2
      Conserved Domains (4) summary
      cd00204
      Location:75 → 201
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:40 → 758
      trp; transient-receptor-potential calcium channel protein
      pfam08344
      Location:199 → 252
      TRP_2; Transient receptor ion channel II
      sd00045
      Location:80 → 111
      ANK; ANK repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases