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    LOC408878 protein mesh [ Apis mellifera (honey bee) ]

    Gene ID: 408878, updated on 31-Jan-2024

    Summary

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    Gene symbol
    LOC408878
    Gene description
    protein mesh
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    GB52947
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    Genomic context

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    Location:
    chromosome: LG6
    Exon count:
    17
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG6 NC_037643.1 (10855815..10863189, complement)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG6 NC_007075.3 (11221180..11228554, complement)

    Linkage Group LG6 - NC_037643.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 24 Neighboring gene LARGE xylosyl- and glucuronyltransferase 1 Neighboring gene CCR4-NOT transcription complex subunit 7 Neighboring gene uncharacterized LOC100576573

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
    2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
    3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
    4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein mesh

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037643.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      10855815..10863189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_392408.6 → XP_392408.3  protein mesh isoform X2

      UniProtKB/TrEMBL
      A0A7M7R5L4, A0A8B9AW43, A0A8U1I0I8
      Conserved Domains (4) summary
      smart00032
      Location:1127 → 1177
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
      smart00216
      Location:815 → 1003
      VWD; von Willebrand factor (vWF) type D domain
      smart00539
      Location:266 → 430
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      pfam03782
      Location:664 → 809
      AMOP; AMOP domain

    2. XM_006568237.3 → XP_006568300.1  protein mesh isoform X1

      UniProtKB/TrEMBL
      A0A7M7H1B3, A0A8B6Z6P6
      Conserved Domains (4) summary
      smart00032
      Location:1127 → 1177
      CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
      smart00216
      Location:815 → 1003
      VWD; von Willebrand factor (vWF) type D domain
      smart00539
      Location:266 → 430
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      pfam03782
      Location:664 → 809
      AMOP; AMOP domain
    Nucleotide Protein Strain
    Heading Accession and Version

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